Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1332 120 3e-22 seq2035 95.1 1e-14 seq1384 95.1 1e-14 seq1867 93.3 5e-14 seq2358 91.5 2e-13 seq2351 91.5 2e-13 seq633 91.5 2e-13 seq2493 89.7 6e-13 seq1925 89.7 6e-13 seq1802 89.7 6e-13 seq1750 89.7 6e-13 seq885 82.4 8e-11 >seq1332 Length=523337 Score = 120 bits (132), Expect = 3e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 ||||| ||| || | ||||| | ||||||||| | ||| ||||||||||| ||||| Sbjct 493982 TTATCAACCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTA 494041 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||||| ||||| || |||| || | |||||| || || || || | |||||||| || Sbjct 494042 ATCAGAGAGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATC 494101 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCG 42153 | || | || |||||| | | ||| | || | || | || || | | ||| || || | Sbjct 494102 TGGAGGAATGCCCTCCTTAT-CTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAG 494160 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | ||||| || || || |||||||| || ||||| |||||||| Sbjct 494161 CCTCGACCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq2035 Length=189789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 62486 AAAAGTTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 62427 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 62426 CACCACTATACTACCGAGGA 62407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 63072 AAAAGTTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 63131 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 63132 CACCACTATACTACCGAGGA 63151 >seq1384 Length=454056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||| || |||| |||| | |||||||||| || || || ||||||||||||| ||| Sbjct 170324 GAAAAGTTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATA 170383 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 170384 CTCACCACTATACTACCGAGGA 170405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||| || |||| |||| | |||||||||| || || || ||||||||||||| ||| Sbjct 171715 GAAAAGTTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATA 171656 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 171655 CTCACCACTATACTACCGAGGA 171634 >seq1867 Length=410790 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||| | ||| || ||||| || |||||||| | |||||| || | Sbjct 315248 ACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC 315307 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || || || || || || || || | ||||||||||| | ||| | || ||||| Sbjct 315308 GTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTT 315367 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | || | || | | || ||||| | ||| || || | |||| Sbjct 315368 GT-CTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGA 315426 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || || || ||||| || || ||||||||| Sbjct 315427 TGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||| | ||||| ||| | ||| || ||||| || |||||||| | Sbjct 315008 ACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGA 315067 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || |||| || || || || || || || || | ||||||||||| | ||| Sbjct 315068 CAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGG 315127 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || || |||| | ||| | || | || | || | | || ||||| | ||| | Sbjct 315128 GATGCCTTCTTTGT-CTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAA 315186 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 315187 CTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 >seq2358 Length=1285720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 780892 AAAAGTGGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 780833 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 780832 CACCACTATACTACCGAGGA 780813 >seq2351 Length=1334318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 761334 AAAACCTCCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 761275 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 761274 CACCACTATACTACCGAGGA 761255 >seq633 Length=67832 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 63130 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 63071 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 63070 TACTACCGAGGAGTG 63056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 67760 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 67819 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 67820 TACTACCGAGGA 67831 >seq2493 Length=655524 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 365771 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 365712 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 365711 TACTACCGAGGA 365700 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 366301 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 366242 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 366241 TACTACCGAGGA 366230 >seq1925 Length=302650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 100649 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 100708 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 100709 TACTACCGAGGA 100720 >seq1802 Length=801687 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 776267 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 776326 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 776327 TACTACCGAGGA 776338 >seq1750 Length=85878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 71665 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 71724 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 71725 TACTACCGAGGA 71736 >seq885 Length=21769 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | | |||||||| || || || ||||||||||||| ||||||||||||| Sbjct 20468 CTCCCCGGCCGGGAGTCGAACCCAGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 20409 Query 57067 TACTACCGAGGAT 57079 ||| ||||||||| Sbjct 20408 TACCACCGAGGAT 20396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543183276384320