Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1867 95.1 1e-14 >seq1867 Length=410790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | ||||| || || |||||||| || || |||||| | Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| |||||||| || | | || || || || ||||| || || || ||||| || Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 138520 TCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||| | | || | ||||| | | ||| ||||||| || | Sbjct 291334 TCT-TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGAT 291392 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| || || |||||||||||||| Sbjct 291393 AGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||| ||| || ||| || ||| || |||||||| |||| | Sbjct 315042 GATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCA 315101 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || | |||||| ||||| || || || ||||||||||| ||| | || | || | Sbjct 315102 AAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTC-TTGAATCTTCGCCTTCAC 315160 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| ||| | | || || || | || | ||| ||||| ||||| || || Sbjct 315161 ATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTT 315220 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 315221 CACAAATATCTGCATG 315236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || ||||| |||||| |||||||| || | Sbjct 291919 GATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCG 291978 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || || || ||||| || || || ||||| || || ||| | || | ||| | Sbjct 291979 AAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC-TTGAATCTTCGCTTTCAC 292037 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | ||| ||||||| || | || || |||||||| || || Sbjct 292038 GTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTT 292097 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 292098 CACAAAAATCTGCAT 292112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496235428138560