Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq1218 1925 0.0 seq1097 508 2e-139 seq1110 185 3e-42 seq1131 156 2e-33 >seq1218 Length=1093 Score = 1925 bits (2134), Expect = 0.0 Identities = 1082/1092 (99%), Gaps = 0/1092 (0%) Strand=Plus/Plus Query 60938 CACCGCGGGTAATGAGCATCAACAGCGCAATCCCGCCAGCCTGACAAAGCTGATGACGGG 60997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACCGCGGGTAATGAGCATCAACAGCGCAATCCCGCCAGCCTGACAAAGCTGATGACGGG 60 Query 60998 CTATGTCGTGGATCGCGCTATCGATAGTCATCGCATTACGCCAGACGATATTGTCACCGT 61057 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTATGTCGTGGATCGCGCTATCGATAGTCATCGCATTACGCCAGACGATATTGTCACCGT 120 Query 61058 GGGGCGCGATGCGTGGGCGAAAGATAATCCAGTGTTTGTCGGTTCTTCACTGATGTTTTT 61117 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 GGGGCGCGATGCGTGGGCGAAAGATAATCCGGTGTTTGTCGGTTCTTCACTGATGTTTTT 180 Query 61118 GAAAGAGGGCGATCGCGTATCGGTACGTGATTTAAGCCGTGGTTTAATTGTGGATTCCGG 61177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAAAGAGGGCGATCGCGTATCGGTACGTGATTTAAGCCGTGGTTTAATTGTGGATTCCGG 240 Query 61178 AAATGACGCTTGTGTTGCACTGGCTGACTATATTGCCGGTGGGCAACGGCAGTTTGTTGA 61237 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAATGACGCTTGTGTTGCTCTGGCTGACTATATTGCCGGTGGGCAACGGCAGTTTGTTGA 300 Query 61238 AATGATGAACAACTATGCCGAGAAGCTGCATCTCAAGGATACGCATTTTGAAACAGTGCA 61297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AATGATGAACAACTATGCCGAGAAGCTGCATCTCAAGGATACGCATTTTGAAACAGTGCA 360 Query 61298 TGGTCTGGATGCACCAGGTCAGCATAGCTCGGCTTATGATTTAGCTGTGCTTTCTCGCGC 61357 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 361 TGGTCTGGATGCACCTGGCCAGCATAGCTCGGCTTATGATTTAGCTGTGCTTTCTCGTGC 420 Query 61358 TATCATCCACGGCGAGCCCGAGTTTTATCATATGTACAGTGAGAAAAGTCTCACCTGGAA 61417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TATCATCCACGGCGAGCCCGAGTTTTATCATATGTACAGTGAGAAAAGTCTCACCTGGAA 480 Query 61418 CGGTATCACCCAGCAAAACCGTAACGGGTTATTGTGGGATAAAACCATGAATGTTGACGG 61477 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 CGGTATCACCCAGCAAAACCGTAACGGGTTGTTGTGGGATAAAACCATGAATGTTGACGG 540 Query 61478 CCTGAAAACGGGTCATACTTCTGGTGCCGGGTTTAATCTCATTGCTTCGGCTGTAGATGG 61537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCTGAAAACGGGTCATACTTCTGGTGCCGGGTTTAATCTCATTGCTTCGGCTGTAGATGG 600 Query 61538 GCAGCGTCGTCTCATTGCAGTGGTAATGGGGGCTGACAGTGCAAAAGGTCGTGAGGAAGA 61597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCAGCGTCGTCTCATTGCAGTGGTAATGGGGGCTGACAGTGCAAAAGGTCGTGAGGAAGA 660 Query 61598 GGCAAGAAAATTACTGCGTTGGGGGCAACAAAACTTTACTACGGTGCAAATTTTGCACCG 61657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGCAAGAAAATTACTGCGTTGGGGGCAACAAAACTTTACTACGGTGCAAATTTTGCACCG 720 Query 61658 TGGGAAAAAGGTCGGTACGGAACGCATCTGGTATGGCGATAAAGAAAATATCGCCCTGGG 61717 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 TGGGAAAAAGGTCGGAACGGAACGCATCTGGTATGGCGATAAAGAAAATATCGACCTGGG 780 Query 61718 AACGGAACAAGAGTTCTGGATGGTGCTACCGAAAGCCGAAATTCCACATATCAAAGCCAA 61777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AACGGAACAAGAGTTCTGGATGGTGCTACCGAAAGCCGAAATTCCACATATCAAAGCCAA 840 Query 61778 ATATACCCTTGATGGTAAAGAGCTCACCGCGCCAATTAGCGCCCATCAGCGGGTAGGGGA 61837 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 841 ATATACCCTTGATGGTAAAGAACTCACCGCGCCAATTAGCGCCCATCAGCGGGTAGGGGA 900 Query 61838 AATTGAACTTTACGACCGTGATAAACAGGTGGCGCACTGGCCGCTGGTTACCCTGGAATC 61897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AATTGAACTTTACGACCGTGATAAACAGGTGGCGCACTGGCCGCTGGTTACCCTGGAATC 960 Query 61898 TGTCGGGGAAGGCAGCATGTTTTCTCGCCTGAGTGATTATTTCCACCATAAGGCCTGACC 61957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TGTCGGGGAAGGCAGCATGTTTTCTCGCCTGAGTGATTATTTCCACCATAAGGCCTGACC 1020 Query 61958 TTTCTTTTGCAGCAGACTGGCAGGAGTGCGAGTCTGCTCGCATAATCAACACTCATTCCT 62017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTTCTTTTGCAGCAGACTGGCAGGAGTGCGAGTCTGCTCGCATAATCAACACTCATTCCT 1080 Query 62018 TGTGGTTTTAAT 62029 |||||||||||| Sbjct 1081 TGTGGTTTTAAT 1092 >seq1097 Length=3195 Score = 508 bits (562), Expect = 2e-139 Identities = 296/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 5934 TACCCGGATATTATCGTGAGGATGCTTCATCGCCATTGCTCCCCAAATACAAAACCAATT 5993 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 314 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 373 Query 5994 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 6053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 433 Query 6054 ATGTACTTTTCATCCCGCTCAACCACGACATAATGCAGTCCTTCACGCTTCATACGTGGG 6113 ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 434 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGG 493 Query 6114 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 6173 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 494 TCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 553 Query 6174 GCCATGTAAGCCGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 6233 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 613 Query 6234 GAGGTA 6239 |||||| Sbjct 614 GAGGTA 619 >seq1110 Length=2318 Score = 185 bits (204), Expect = 3e-42 Identities = 204/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 30171 ATGAGCAGGGTAACCGTTATTATCTCCGCTCTGGTTATCTGCATTATCGCCTGCCTGTCA 30230 |||||||| || |||| |||||||||||||||||||||||||| |||| |||||||||| Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 30231 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA--- 30287 |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 30288 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACGTGAT 30329 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 30330 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGC-GACTATCGA 30388 || || | || || || | |||||| |||||| | |||||||| || || || || || Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAAT-GA 1847 Query 30389 AAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 30419 ||| |||| ||||||| | ||||| ||| Sbjct 1848 TGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 >seq1131 Length=1733 Score = 156 bits (172), Expect = 2e-33 Identities = 120/141 (85%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 32112 CCGGCGGCAAGATTCAATGACCCACGCAGAAAAATTTTCTGAACCTTTCTGGTCA-GAGC 32170 ||| ||||| | |||||||||||| || || ||||| | || ||||| || ||| |||| Sbjct 158 CCGACGGCAGGCTTCAATGACCCAGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGC 217 Query 32171 GATGTTAATTTGTTCAATCATCTGGTTTCGAAATCGGATGTTGCGGGTTGTTGTTCTGCG 32230 ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| Sbjct 218 GATGTTAATTTGTTCAATCATTTGGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCG 277 Query 32231 GGTCCGGTTTTTCGATGACAT 32251 ||| | ||| |||| |||||| Sbjct 278 GGTTCTGTTCTTCGTTGACAT 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198735068222224