Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1867 134 1e-26 seq1332 107 1e-18 seq1873 89.7 4e-13 >seq1867 Length=410790 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | ||| || || || |||||||| |||||||||||| Sbjct 315235 TGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGG 315294 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| ||||||| | ||||||||| || | ||||||||||| ||||| || Sbjct 315295 ACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTG 315354 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || |||||| | || || |||||||| ||| | Sbjct 315355 GGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAA 315414 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || || || || || |||||||| Sbjct 315415 CTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || |||||||| |||||||||||| ||| ||| ||||||| | ||| Sbjct 315032 ATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTG 315091 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| || | ||||||||||| ||||| ||| || ||||| ||||| ||| || Sbjct 315092 TTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTT 315151 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || |||||||| ||| || || | ||| || || ||||| || Sbjct 315152 CGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGT 315211 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || ||||| Sbjct 315212 CAGGGTCTTCACAAATATCTGCAT 315235 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||| ||||||||||| ||||| || |||||||| || || ||| || |||||| Sbjct 291448 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAATGTACGACCGTCTT 291505 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||||||||||||| | || | || || ||||| ||| || |||||||| || Sbjct 291506 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 291565 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||| || | || || || || || || || || | ||| || || | Sbjct 291566 GAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCT 291625 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || |||||||| |||||| Sbjct 291626 TGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291657 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||| ||||||||||| ||||| || |||||||| || || ||| || |||||| Sbjct 291676 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAATGTACGACCGTCTT 291733 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||||||||||||| | || | || || ||||| ||| || |||||||| || Sbjct 291734 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 291793 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||| || | || || || || || || || || | ||| || || | Sbjct 291794 GAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCT 291853 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || |||||||| |||||| Sbjct 291854 TGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291885 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||| ||||||||||| ||||| || |||||||| || || ||| || |||||| Sbjct 292132 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAATGTACGACCGTCTT 292189 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||||||||||||| | || | || || ||||| ||| || |||||||| || Sbjct 292190 CCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 292249 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||| || | || || || |||||| || || || | || || || | Sbjct 292250 GAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCT 292309 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| || || ||||| || ||||| Sbjct 292310 TGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||| ||||||||||| ||||| || |||||||| || || ||| || |||| | Sbjct 291904 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAATGTACGACCGTCCT 291961 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||| ||||||||||||| | || | || || ||||| ||| || |||||||| || Sbjct 291962 CTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTT 292021 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||| || | || || || || || || || || | ||| || || | Sbjct 292022 GAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCT 292081 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || |||||||| |||||| Sbjct 292082 TGCCAGTCAGCGTCTTCACAAAAATCTGCATA 292113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || || | ||||| ||||| || ||||||||||| | | | | |||| Sbjct 291217 AAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCC 291276 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||||||||||||| | || | || || ||||| ||| || |||||||| || Sbjct 291277 TCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291336 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || ||| || | || || || || || || || || | ||| || || Sbjct 291337 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291396 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||||| |||||| Sbjct 291397 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291429 >seq1332 Length=523337 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| | | || |||||||| || || || ||||| ||||||||||| | Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || || ||||| || | ||||||||||| || || ||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||| || ||| || | || || ||||| ||| || || Sbjct 494109 ATGCCCTCCTTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACC 494168 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || || || || ||||| |||||||||||||| Sbjct 494169 TCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq1873 Length=396352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | | || | ||| | ||| | ||| || ||||| || ||||||||||| Sbjct 292717 TGCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAG 292658 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | ||| || || ||| | ||||| || ||||| || | Sbjct 292657 AAAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAG 292598 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | || ||||||||||| ||| ||| ||| ||| |||| || ||||| | || ||| Sbjct 292597 GGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGATGCTTCA 292539 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | ||||| || || || || || || || || || || ||||| || Sbjct 292538 ACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357373061351180