Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1867 107 2e-18 seq1332 107 2e-18 >seq1867 Length=410790 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | ||||||||||| || || |||||||| | Sbjct 291202 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGAC 291261 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || ||||| ||||| |||||| | || | || ||||| || || || Sbjct 291262 AAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 291321 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || ||| || | | || | ||||| | |||||| Sbjct 291322 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 291381 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| ||||| || || |||||||||||||| Sbjct 291382 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | ||||| ||||| || || ||||| || | Sbjct 291886 CCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 291945 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || ||||| ||||| |||||| | || | || ||||| || || || Sbjct 291946 AATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 292005 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || ||| || | | || | ||||| | |||||| Sbjct 292006 ATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 292065 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| ||||| || || |||||||||||||| Sbjct 292066 TCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 >seq1332 Length=523337 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || || | ||||||||| | || || || |||||||| |||||||| Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || || || | ||||| ||||||||||| ||||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||| | | ||| | | |||| | ||| |||| || || || ||||| Sbjct 494109 ATGCCCTCCTTAT-CTTGAATCTTAGCTTTAACGTT-CTCGATCGTATCACTAGCCTCGA 494166 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || || ||||| || ||||| |||||||| |||||| Sbjct 494167 CCTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATG 494216 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | ||||||||||||||| || ||||| || Sbjct 494217 CCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAG 494276 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | || || || || | |||| || || || ||||| || Sbjct 494277 AGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGA 494336 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| |||||| ||||| | ||||| ||| || | |||||| Sbjct 494337 ATCCCTTCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACT 494396 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || |||| ||||| || || |||||||| Sbjct 494397 TCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | || | || | || || || ||||| || ||||| || Sbjct 494445 CCACCGCGCAAGCGGAGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 494504 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| ||||||||||| || ||| | ||||| ||||||||||| || || Sbjct 494505 AGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGA 494564 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || || ||| | | |||| ||| || | ||| || Sbjct 494565 ATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACC 494624 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| || | || || || |||| || || || ||||||||||| || Sbjct 494625 TCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCATCGC 494674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475474956531520