Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq1097 316 6e-82 seq1110 242 1e-59 >seq1097 Length=3195 Score = 316 bits (350), Expect = 6e-82 Identities = 258/313 (82%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 22607 TTCTCCGCTTTTTCCTCAAGCCAGCGCATGCAGGCATCATCAAACGTTACATCAGGGAAA 22666 || || ||||||||||||||||| | | |||||| || ||||| || |||||||| ||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 22667 TCACCAAGCCTGTCTACTCGCCACAATTCAGCTTTGCGCTTGTCATGTAGCTCAGTAGCG 22726 || || ||| | ||||||||||| | ||| ||||| |||||||| || | ||| ||| Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 22727 AGCCGCTTGTCGGAAGTCCCAAGGCTTTCCTTAATTCGCTTCCCGCCCGGTGTCGAGTAG 22786 |||| ||||| || ||||| |||||||||||| ||||||||||| ||| || Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGAGCGAATAC 182 Query 22787 GACGCGTACCATATTTCACCTCTGCGGAAGATAGACATTTTCTTTCCTCTTTTATGTCAT 22846 || || |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| Sbjct 183 GAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCAT 242 Query 22847 CACCCGCGCTCACCTTAACAGTATGCAGCGGAGATTGAAGCGCCGCAATGCAGGCTTGTC 22906 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 243 CACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCC 302 Query 22907 GTGTGGTGAGGTA 22919 |||| |||||||| Sbjct 303 GTGTTGTGAGGTA 315 >seq1110 Length=2318 Score = 242 bits (268), Expect = 1e-59 Identities = 227/288 (79%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 40442 GTCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCA 40501 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 40502 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAG 40561 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 40562 AGCAGCGCGATAAA---GCCACA----TCCATC--------------ATCGCTGATATGC 40600 |||||||| ||| |||| | | | | || |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 40601 AGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATG 40660 ||| |||||| |||||||| || | ||||| || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 40661 CTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 40707 | || || || || || ||| |||| ||||||| | ||||||||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137522499002928