Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1867 114 1e-20 seq1332 113 4e-20 seq2115 84.2 2e-11 seq1873 82.4 7e-11 >seq1867 Length=410790 Score = 114 bits (126), Expect = 1e-20 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | |||||| || || || ||||| || ||||| || || || Sbjct 292111 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 292170 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||||||||| || ||| | || | ||||||||||| | Sbjct 292171 --GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAG 292228 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || |||||||| ||||||||||| || ||| | || | || | |||||| || | Sbjct 292229 GTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCA-CGTTCTCAATTGTGTCGCTAGCC 292287 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||| || ||||| | || ||||| || || || || ||||| || ||||||| Sbjct 292288 TCGACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCG 292342 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | |||||| || || || ||||| || ||||| || || || Sbjct 291427 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291486 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||||||||| || ||| | || | ||||||||||| | Sbjct 291487 --GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAG 291544 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || |||||||| ||||||||||| || ||| | || | || | ||||| | | Sbjct 291545 GTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCA-CGTTCTCAATTGTGTCACTGGCC 291603 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || | || ||||| || || || || |||||||| ||||| Sbjct 291604 TCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | |||||| || || || ||||| || ||||| || || || Sbjct 291655 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291714 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || ||||||||||| || ||| | || | ||||||||||| | Sbjct 291715 --GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAG 291772 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || |||||||| ||||||||||| || ||| | || | || | ||||| | | Sbjct 291773 GTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCA-CGTTCTCAATTGTGTCACTGGCC 291831 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || | || ||||| || || || || |||||||| ||||| Sbjct 291832 TCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| ||||| || || ||||| |||||||| || |||||| | Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCG--G 315066 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | || || || || | |||||| || || | ||||| || |||||||| || | Sbjct 315067 ACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTG 315126 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||||||||| |||||||| || || | || | ||| ||| | || | Sbjct 315127 GGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAA 315186 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | ||| || ||||| || || || ||||| || ||||| Sbjct 315187 CTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | |||||| || || || ||||| || ||||| || || || Sbjct 291883 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 291942 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || || | |||||| || ||| | || | ||||||||||| | Sbjct 291943 --GACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAG 292000 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || |||||||| ||||||||||| || ||| | || | || | ||||| | | Sbjct 292001 GTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCA-CGTTCTCAATTGTGTCACTGGCC 292059 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || | || ||||| || || || || |||||||| ||||| Sbjct 292060 TCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | |||||| || ||| | || | ||||||||||| || || |||||||| ||| Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || ||| | || | || | ||||| | |||||| ||||| || | Sbjct 291334 TCTTGAATCTTCGCTTTCA-CGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGAT 291392 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || |||||||| ||||| Sbjct 291393 AGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 >seq1332 Length=523337 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || ||||||||||| || || ||||| || || | || || Sbjct 494006 CACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTC 494065 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || ||||| | ||||| || ||||| || || |||||||| || |||||||| Sbjct 494066 CAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 494125 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || | || | || | || | || | || || || |||||| || ||||| | || | Sbjct 494126 AA-TCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCT 494184 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| ||||| |||||||||||||| Sbjct 494185 TTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 >seq2115 Length=135315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCA-G 123662 ||||||||||||| || | |||||| ||||| || || ||||||||||| ||||||| Sbjct 37949 TCGAAACCGGAACTCCCTTCATGCTGTACAAGGATGCTTGCAACAGGAAGTCCAATCATC 37890 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 |||| | ||||||| || |||||||| || || | || ||||| || || ||| Sbjct 37889 AGCATC-TGGGAACCATCCGGTGTAGTAACCTGTGTACAGAGATTATTGAGTATAGCTCA 37831 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | ||| || || || || ||| | ||||| || Sbjct 37830 CCGGATGAAACTGCAGTTTGCAATCTCGCTTCTAT 37796 >seq1873 Length=396352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || || | ||| | || || ||||||| || ||||| || || || || |||| Sbjct 292720 TTATGCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAAT 292661 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || || |||| ||| ||||| ||| | ||||||||||| || || | Sbjct 292660 CAGAAAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTG 292601 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || ||||| || |||||||| || ||||| ||| | ||| || || | | Sbjct 292600 GAGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTT 292541 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || |||| || || || || || || || || || || |||||| Sbjct 292540 CAACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATC 292488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451978633626080