Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1332 123 6e-23 seq1867 120 7e-22 >seq1332 Length=523337 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||||||||| || ||||| ||||||| ||||||||| | | ||| Sbjct 494223 CGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTG 494282 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| ||||| || || || || ||||| || ||||| || ||| ||| Sbjct 494283 CGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCT 494342 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||| || ||||| ||| || ||| ||| || ||||| Sbjct 494343 TCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAA 494402 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||||| || || || || Sbjct 494403 GTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTG 494440 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| |||||||| |||||||||| ||||||||||| | ||| | ||||||| Sbjct 494460 AGAACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCT 494519 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || ||||| || | |||||||| || || ||| ||||| || Sbjct 494520 TCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCT 494579 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| ||| || | | || || || | || || ||| Sbjct 494580 TGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTC 494639 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| ||||| || Sbjct 494640 TTTCCTGTCAACGTCTTCACGAAAATCTG 494668 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || |||||||| | |||||| |||| | ||| | || ||||||| |||| Sbjct 494013 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 494072 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || | ||||||||| || ||| ||| || || || |||||||| Sbjct 494073 TTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTTA 494132 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| |||| || || | | || || |||| ||||| ||||| || || Sbjct 494133 GCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTT 494192 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| Sbjct 494193 AGCGTTTTAACAAAAATTTG 494212 >seq1867 Length=410790 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| || || ||||||| |||||| || | || ||| | || ||| Sbjct 315024 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315083 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | |||||||||||| || || |||||| || Sbjct 315084 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCT 315143 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | ||| || ||| ||| || || | ||||||||| Sbjct 315144 TGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 315203 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || Sbjct 315204 TTACCGGTCAGGGTCTTCACAAATATCTG 315232 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| || || ||||||| |||||| || | || ||| | || ||| Sbjct 315252 AGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCT 315311 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | |||||||||||| || || ||||| || Sbjct 315312 TCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 315371 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||| || ||| ||| || || | ||||| ||| Sbjct 315372 TGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTC 315431 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 315432 TTCCCAGTAAGTGTCTTCACGAATATTTG 315460 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || || || |||| ||||||||||| ||| || Sbjct 291436 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291495 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || || || ||||| || || || |||||||| || || ||| Sbjct 291496 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 291555 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | || || || | Sbjct 291556 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 291615 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||||||||| || Sbjct 291616 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTG 291653 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || || || |||| ||||||||||| ||| || Sbjct 291664 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291723 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || || || ||||| || || || |||||||| || || ||| Sbjct 291724 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 291783 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | || || || | Sbjct 291784 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 291843 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||||||||| || Sbjct 291844 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTG 291881 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||| ||||| || |||| |||||| |||| |||||| Sbjct 291208 CGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTA 291267 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || || || || ||||| || || || |||||||| || || ||| Sbjct 291268 CGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 291327 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | || || || | Sbjct 291328 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 291387 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||||||||| || Sbjct 291388 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTG 291425 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || || || |||| ||||||||||| ||| || Sbjct 291892 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 291951 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || || || || ||||| || || || |||||||| || || ||| Sbjct 291952 CGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 292011 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | || || || | Sbjct 292012 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGG 292071 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||||||||| || Sbjct 292072 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTG 292109 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || || || |||| ||||||||||| ||| || Sbjct 292120 CGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTA 292179 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || || || ||||| || || || |||||||| || || ||| Sbjct 292180 CGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 292239 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | || || || | Sbjct 292240 TCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGA 292299 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 292300 GTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTG 292337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178855923751316