Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1867 118 1e-21 seq1332 118 1e-21 >seq1867 Length=410790 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||||||| | || || |||||||| ||||| |||| Sbjct 315235 TGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGG 315294 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| || || || |||||||| || ||||| ||||||||||| | | Sbjct 315295 ACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTG 315354 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||| | || | | || ||||| | ||| | Sbjct 315355 GGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAA 315414 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | |||||||| || || || || || || || || ||||||||| Sbjct 315415 CTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 46356 TATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATAT 46415 || || ||| || || | || ||| | ||||||||| | || || |||||||| | Sbjct 314998 TAAATGATTAACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGT 315057 Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||| ||||| ||||| || |||| || || || |||||||| || ||||| ||||||| Sbjct 315058 TGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCT 315117 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | || || ||||| |||||| ||| | || | | || |||| Sbjct 315118 GGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGC 315177 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | | ||| || || | ||||| || || || ||||| || || ||||| || ||||| Sbjct 315178 TTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 >seq1332 Length=523337 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | ||||| ||| | || |||||||| || ||||| || || |||||||| Sbjct 493998 AAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 494057 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || | ||||||||| || || ||||| |||||||| || | || | || |||| Sbjct 494058 CCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 494117 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCCACCGT 46554 || || ||||| ||| | ||| | | | ||| || || | || || |||| || Sbjct 494118 TTATCTTGAATCTTAG-CTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGT 494176 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || |||||||||||||| |||||||| Sbjct 494177 GATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || ||||| ||||| ||||| Sbjct 494481 TCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAA 494540 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||||||||| || | || | || ||||| || ||||| ||| | || Sbjct 494541 ATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTC 494600 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || |||| || || || | || ||||| || || |||| ||| || || Sbjct 494601 TCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACG 494660 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 494661 AAAATCTGCAT 494671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565207679292960