Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1456 187 2e-42 seq1332 129 6e-25 seq1867 111 2e-19 >seq1456 Length=366961 Score = 187 bits (206), Expect = 2e-42 Identities = 428/646 (66%), Gaps = 40/646 (6%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| ||| |||||| || |||||||| || | ||||| ||||| || ||||| ||| Sbjct 310828 TTGTACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTG 310887 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||||| || || || ||||| | ||||||||||| ||||||||||| |||||||| ||| Sbjct 310888 CTGAATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTG 310947 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || || ||||| | |||||||| || || || || || | ||||| | ||||| | Sbjct 310948 CCAGAGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAA 311007 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | | |||||| |||||||||| ||||| | ||| ||| | ||| Sbjct 311008 TGAGTATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTAG-GTT 311066 Query 133123 TC-GATGGCGTTCAACA----------------------------AACGGAGTTTCTCTT 133153 | ||||||||| |||| || || ||| | Sbjct 311067 GCTGATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTA 311126 Query 133154 CCGA------GGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 ||| ||| | | || ||||| || || |||||||| || || |||| Sbjct 311127 CCGTTCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTAT 311186 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 |||||| |||||||| || | || ||||| ||||| |||| || || |||||||| Sbjct 311187 GTTCTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTG 311246 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 | |||||||||||||| ||| || || || || || || || || || ||||| | Sbjct 311247 ACTGAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAA 311306 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTT 133385 ||| | |||||| || || ||| | | || | | | |||||| | ||||| Sbjct 311307 CACATATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTT 311366 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CC 133444 ||| || || |||||||| |||||||||||||| || | ||||| || || | ||| || Sbjct 311367 GGAGAGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATA-AAACTGCC 311425 Query 133445 ACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 | | || ||||| ||||| || | ||||| || | ||||| Sbjct 311426 AAACATCGTGGTATTGGATGGGGAATAGAACAAATCGATGTGGGTT 311471 >seq1332 Length=523337 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || || || ||||| | || |||||||| | Sbjct 494215 ATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGT 494156 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||||| || || | || || ||||| ||||| | || || Sbjct 494155 GATACGATCGAGAACG-TTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCA 494097 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || ||||| ||| |||| |||| ||||| ||| || ||||| Sbjct 494096 GCAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAA 494037 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||||||| | || || ||||||||||| |||||| | ||||| Sbjct 494036 CATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGG 493989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || ||||| || |||| || ||||| | Sbjct 494671 ATGCAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGAGT 494612 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | || || || || ||||| | || || Sbjct 494611 GATACCATCGAGAATGTGAAGGCTAAGATTCAAGATAAGGAAGGCATTCCACCTGATCAG 494552 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||||||||||||||| || || | ||||| || ||||||||| Sbjct 494551 CAGCGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACAAC 494492 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| || || | || || || ||| | || || Sbjct 494491 ATCCAAAAGGAATCGACTCTTCACCTCGTTCTCCGCTTGCGCGGTGG 494445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| ||||| | || || |||||||| || | || ||||| | | Sbjct 494443 ATGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGT 494384 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | ||||| | || || || || ||||| |||||||| Sbjct 494383 GATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAA 494324 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || || |||| |||| ||||| ||| ||||||||| Sbjct 494323 CAACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAAC 494264 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| || | ||||| || Sbjct 494263 ATCCAAAAAGAGTCTACGCTCCA 494241 >seq1867 Length=410790 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||||||||| || || || || || || ||||||||| | || || || || | Sbjct 315464 AATGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAG 315405 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || || | ||||| || || || || | ||||| Sbjct 315404 CGATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCA 315345 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || |||||||| || || |||| || || || ||| ||||| Sbjct 315344 GCAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAA 315285 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||| | || || ||| ||||||| ||| || | || ||| Sbjct 315284 CATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTGCGTGGTGGC 315236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || |||||| |||| |||||||||| Sbjct 291656 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291597 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | || || || || || || | ||||| Sbjct 291596 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291538 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| |||||||| |||| |||| || || | |||||||| Sbjct 291537 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291478 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || || || | ||||| || Sbjct 291477 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCG 291442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || |||||| |||| |||||||||| Sbjct 291884 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291825 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | || || || || || || | ||||| Sbjct 291824 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291766 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| |||||||| |||| |||| || || | |||||||| Sbjct 291765 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 291706 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || || || | ||||| || Sbjct 291705 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCG 291670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || |||||| |||| |||||||||| Sbjct 292112 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 292053 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | || || || || || || | ||||| Sbjct 292052 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291994 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| |||||||| || || |||| || || | |||||||| Sbjct 291993 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACATTGTCTGACTACAA 291934 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || || || | ||||| || Sbjct 291933 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCG 291898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || || || |||||| | || || || || | | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | |||||||| || || || | ||||| Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || |||||||| || || |||| || || || ||| |||||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||| | || || ||| ||||||| ||| Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGT 315020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || |||||| |||| |||||||||| Sbjct 291428 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACTATCACCCTCGAGGTCGAGGCCAGT 291369 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | || || || || || || | ||||| Sbjct 291368 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 291310 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| |||||||| || || |||| || || | || ||||| Sbjct 291309 GCAACGCCTTATTTTCGCTGGCAAACAACTAGAGGACGGTCGTACTTTGTCTGATTACAA 291250 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || |||| ||||| |||| Sbjct 291249 CATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCG 291214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || ||||| | || |||||||| | | Sbjct 292340 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCTAGC 292281 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || || | || || || || || || | ||||| Sbjct 292280 GACACAATTGAGAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 292222 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| |||||||| |||| |||| || || | |||||||| Sbjct 292221 GCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCGTACATTGTCTGACTACAA 292162 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || || || | ||||| || Sbjct 292161 CATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCG 292126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145615608320