Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2115 84.2 3e-11 >seq2115 Length=135315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||| ||| | ||| | ||||||| ||||||| || |||||||||||||| || || Sbjct 36995 TAGACGTTGCTAGTGAAAGGTTCAATAGATTCATTGTTTCCCAAGATTTGTGCTGTCGAT 37054 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 106035 || ||||||||||| |||| | ||||||||| || | ||| Sbjct 37055 GCAGTTGGCATTGGCGCCAGAAGAAGACTGTTTCGTACACC 37095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC--TTATCTGTGTACTCTAAA 106516 ||||| ||| || || | ||||||||| || || |||||| | | || | |||| | | Sbjct 37789 AAGGGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGTGAGCTAT--ACTCAATA 37846 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || |||||||||| ||| || | || || |||| || || || || ||| || Sbjct 37847 ATCTCTGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGATTGGACTTCCTG 37906 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||||| ||||||||||| |||||| |||| || || || || |||| Sbjct 37907 TTGCAAGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTG 37953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589948734543520