Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq1097 248 2e-61 >seq1097 Length=3195 Score = 248 bits (274), Expect = 2e-61 Identities = 246/315 (78%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 4050 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCATGTCAGGCGTC 4109 |||| || || ||||| | ||| || | |||||||| |||||||| | ||||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 4110 TCTCCTAATTTATTTACCCTCCATGCTTCTGCCTTCAGTTTGTCATGAAGCTCTGTGGCC 4169 || |||| || | ||| | ||| |||||| || | ||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 4170 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTTCGGCAATGTGAA- 4228 |||| |||||||||||| |||||||| | ||||| || ||| ||| ||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 4229 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGTC 4287 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||| | Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 4288 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGTGCCGCAATGCAGGCTTG 4347 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 4348 TCGTGTGGTGAGGTA 4362 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131026834407648