Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq1110 84.2 7e-12 >seq1110 Length=2318 Score = 84.2 bits (92), Expect = 7e-12 Identities = 170/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 142 CAATCACAGCAATGCAGCAACAGCAGCATGACGTTGCAGCAATCGACGCTAAATACACGC 201 |||| || | |||||| | |||| ||| ||||| || |||| || ||||||||| Sbjct 1757 CAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGA 1816 Query 202 GAGAACTGAATGATGCGAAA-CAGACTATTACTGATTTGCAGCGTGACGTTGCCAGCGGT 260 || | |||||||||| | || || | || | ||| ||| |||||| ||| Sbjct 1817 AGGAGTTAGCTGATGCGAAAGCTGAAAATGA-TGCTCTGCGTGATGATGTTGCCGCTGGT 1875 Query 261 GCTAAGCGGCTGCGGGTCAACGCAAAGTGTC---CAGTGCCCAGCCCCGCCACCACCCCC 317 | ||| ||| |||| ||| |||| |||||| || ||||| || || Sbjct 1876 CGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCC 1935 Query 318 GGCCTGGCTAATGACGCCAGCGCCCGACCTGCTGACACCGTTGAACGGGATTATTTCACT 377 ||| ||| ||||| ||| | |||||| || ||||||| |||||||||||||||||| Sbjct 1936 GGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACC 1995 Query 378 CTCCGACAG 386 ||| || || Sbjct 1996 CTCAGAGAG 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151163394653016