Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1873 156 9e-33 seq1867 143 6e-29 seq1332 138 3e-27 >seq1873 Length=396352 Score = 156 bits (172), Expect = 9e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||||| || ||| || || | ||||| ||||| ||||| |||||||| | |||||| Sbjct 292709 CTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTA 292650 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || || || || ||||| || ||||| || | ||||||||| |||||||| || ||| Sbjct 292649 CGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGGATCCCT 292590 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||||||||| || ||||| || || ||||| ||||| ||| || ||||| Sbjct 292589 TCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACCTCAAGC 292530 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || ||||| | ||||| Sbjct 292529 GTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 >seq1867 Length=410790 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| |||||||| || |||||||||| ||||||| || ||||| Sbjct 315027 ACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCA 315086 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | || || ||||| || || |||||||||||||||||| Sbjct 315087 AGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGA 315146 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||||||||| || ||| ||||||||||| | |||||| Sbjct 315147 ATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTA 315206 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 315207 CCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| |||||||| || |||||||||| ||||||| || ||||| Sbjct 315255 ACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCA 315314 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | || || ||||| || || |||||||| ||||||||| Sbjct 315315 AGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGA 315374 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||||||||| || ||| ||||||||||| | ||||| Sbjct 315375 ATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTTC 315434 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | ||||||| Sbjct 315435 CCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 116 bits (128), Expect = 8e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||| | ||| |||||||| || || |||||||| | | ||| | || || Sbjct 291216 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTC 291275 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || || || || ||||| ||||| ||||| ||||| || || |||||||| || || Sbjct 291276 CTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 291335 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 |||||| || || ||||||||||| ||||| ||| || || || ||||| | Sbjct 291336 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGAT 291392 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || |||| || || || || | ||||| Sbjct 291393 AGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || ||||| || || ||||| || | | || | || ||||| Sbjct 292132 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 292191 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || ||||| ||||| ||||| ||||| || || |||||||| || |||||| Sbjct 292192 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 292251 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||||||||| ||||| | || || ||||| || | ||||| Sbjct 292252 ATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTG 292311 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 292312 CCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || ||||| || || ||||| || | | || | || ||||| Sbjct 291448 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 291507 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || ||||| ||||| ||||| ||||| || || |||||||| || |||||| Sbjct 291508 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 291567 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||| ||||| ||| || || || ||||| | ||| Sbjct 291568 ATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATAGTC 291624 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 291625 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || ||||| || || ||||| || | | || | || ||||| Sbjct 291676 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 291735 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || ||||| ||||| ||||| ||||| || || |||||||| || |||||| Sbjct 291736 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 291795 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||| ||||| ||| || || || ||||| | ||| Sbjct 291796 ATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATAGTC 291852 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 291853 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || || ||||| || || ||||| || | | || | || || || Sbjct 291904 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCT 291963 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| ||||| ||||| ||||| || || |||||||| || |||||| Sbjct 291964 AGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 292023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||| ||||| ||| || || || ||||| | ||| Sbjct 292024 ATCTTCGCTTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCGAGGGTGATAGTC 292080 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 292081 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 >seq1332 Length=523337 Score = 138 bits (152), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||||||||| || || ||||||||||| || ||||| || | ||||| | Sbjct 494226 AGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGT 494285 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | ||||| ||||| || || || ||||||||||| || ||||| ||||| Sbjct 494286 CCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCC 494345 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 || || |||||||| |||||| || || ||||| || ||| ||| ||||| | Sbjct 494346 TTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATC---ACTTGATTCGACTTCCAAA 494402 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || |||||||| ||||| ||||| | ||||| Sbjct 494403 GTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| || || ||||| || ||||| || | |||||| | |||||||| Sbjct 494462 AACGAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTC 494521 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || ||||| || | || || || || || ||||||||||| || ||||| Sbjct 494522 TAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCTTG 494581 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| || ||| || ||||| ||||| || ||| || || || || || | || Sbjct 494582 AATCTTAGCCTTCACATTCTCGATGGTATC---ACTCGCCTCAACCTCGAGAGTTATGGT 494638 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||| || || ||||| | ||||| Sbjct 494639 CTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || |||||||| |||||||| | ||||| | || ||||| | |||| Sbjct 494013 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 494072 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| || || | || || || |||||||||||||| || || |||||||| || Sbjct 494073 TTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTTA 494132 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || |||||||| || || || | || || || || || | |||||||| || Sbjct 494133 GCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTT 494192 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 494193 AGCGTTTTAACAAAAATTTGCAT 494215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109419792166916