Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1873 116 2e-21 seq1867 107 1e-18 >seq1873 Length=396352 Score = 116 bits (128), Expect = 2e-21 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || ||||| || | ||| ||||||||||||||| || || ||| Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || ||||| || ||||| || || || | |||||| || ||| | || Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||| |||||||| |||||| |||||| || | ||||| | ||| || || Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGAC--AT--TTTCGATGGTATCCGATGCTTC 292540 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 ||| || | || || || ||||||||||| ||||| || ||||||||||| ||| Sbjct 292539 AACCTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTTC 292485 >seq1867 Length=410790 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||| | || |||||||| ||||| || || || | | || | || Sbjct 291216 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTC 291275 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||| || || || || || ||||||||||| | || | || ||||| || Sbjct 291276 CTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 291335 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||||| ||| ||| | || | |||| |||||| || |||| ||| || || Sbjct 291336 TTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGT 291395 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||||||||| ||||||||| Sbjct 291396 CTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291429 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || | | || | || |||| ||||| || || || Sbjct 291465 TTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAA 291524 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || ||||| || ||||||| ||| ||| Sbjct 291525 AATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTT 291584 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| |||||| || |||| ||| || || || || || || |||||||| Sbjct 291585 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291644 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 291645 AAAAATCTGCATA 291657 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || | | || | || |||| ||||| || || || Sbjct 291693 TTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAA 291752 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || ||||| || ||||||| ||| ||| Sbjct 291753 AATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTT 291812 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| |||||| || |||| ||| || || || || || || |||||||| Sbjct 291813 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291872 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 291873 AAAAATCTGCATA 291885 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || | | || | || || || ||||| || || || Sbjct 291921 TTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCTAGTTGTTTGCCAGCGAA 291980 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || ||||| || ||||||| ||| ||| Sbjct 291981 AATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTT 292040 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| |||||| || |||| ||| || || || || || || |||||||| Sbjct 292041 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 292100 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 292101 AAAAATCTGCATA 292113 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || | | || | || |||| ||||| || || || Sbjct 292149 TTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAA 292208 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || ||||| || ||||||| ||| ||| Sbjct 292209 AATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTT 292268 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||||| || || | || || || || || || || |||||||| Sbjct 292269 CTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCAC 292328 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 292329 AAAGATCTGCAT 292340 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| || || || || |||| | || || || ||||| |||||||| Sbjct 315044 TTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAA 315103 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | || || ||||| ||||||| || || | Sbjct 315104 AATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGAATCTTCGCCTTCAC--A 315161 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||||| || | ||| || || || || || || |||||| Sbjct 315162 TTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTC 315221 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 315222 ACAAATATCTGCAT 315235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324616397259744