Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1456 201 1e-46 >seq1456 Length=366961 Score = 201 bits (222), Expect = 1e-46 Identities = 503/760 (66%), Gaps = 48/760 (6%) Strand=Plus/Plus Query 18832 CAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 || ||||| || || || | || || | ||||| | |||||| | ||||||||| | | Sbjct 310711 CAGTTCATACCAATCAAACTCACTGGCAAAGCATCCGAAAGAAACTTTTGTTCTATTTCT 310770 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA---TGT 18948 || ||||| || || | | || | ||| | | | ||| | | ||| | | | Sbjct 310771 ACCGCCTCCTTAATGATGGCAAGCACACGATCCT---TTGCAGGCTTTTGAACAATGTAT 310827 Query 18949 TTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008 || ||| ||| || || || || || ||||| ||||| || ||||| |||| |||||| Sbjct 310828 TTGTACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTG 310887 Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 |||||||| |||||||||| || | |||||| | ||| ||||| | || || Sbjct 310888 CTGAATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTG 310947 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 ||||| ||||| ||||| || ||||| ||||| ||||||| | || || | ||| | Sbjct 310948 CCAGAGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAA 311007 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACA---------- 19178 | | ||| | |||||| || || ||||| | ||||||| ||||| Sbjct 311008 TGAGTATCACCAATCCAGTTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTAGGTTG 311067 Query 19179 ----TGGCATTG---------TCTCT------ATAGA---ATTAAAT--AGATACATA-- 19212 |||| ||| || || ||| | |||||| |||| | | Sbjct 311068 CTGATGGCGTTGAACAGGAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTAC 311127 Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG--TACATTTCTGAATGAA 19270 || || || |||||| | ||||| || |||| || || ||||| |||||||| | Sbjct 311128 CGTTCTGTTGGATCTTTGATATATGTGTCAATCAG--AAGTGAATACATCTCTGAATGTA 311185 Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330 | || || || || ||||| | || |||||||| | | || | | || ||||| Sbjct 311186 TGTTCTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTT 311245 Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390 || || | ||||||||||| || |||||||||||||| || ||||| || |||| Sbjct 311246 GACTGAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTA 311305 Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATATCT 19449 | |||| | || || || ||| | || || | ||||||| ||| ||| ||| Sbjct 311306 ACACATATGAGATGAAGTGACGTTC-GCCGACCTTGAGACTATTCCAGTCACTAAAATCC 311364 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || || | ||| || || ||||| |||||||| || || ||||||| ||||| | | | Sbjct 311365 TTGGAGAGATCGACCTCCTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGC 311424 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTAT 19549 || | ||| | ||||| || || |||| |||||||| || Sbjct 311425 CAAACATCGTGGTATTGGATGGGGAATAGAACAAATCGAT 311464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562078249386720