Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1550 161 8e-34 seq1546 152 4e-31 seq1355 114 1e-19 seq1867 113 4e-19 seq1332 100 2e-15 >seq1550 Length=270027 Score = 161 bits (178), Expect = 8e-34 Identities = 458/697 (66%), Gaps = 14/697 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| ||||| || |||| || | ||| | ||||||||| || | || || | Sbjct 31876 GCTCTGCGTCGACTGCGAACAGCCTCTGAACGTGCCAAACGAACTTTGAGTTCAAGTGCC 31935 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| | | || | |||||| | ||||| ||| | || | | | || | ||| | Sbjct 31936 CAGGCCAATGTCGAGATTGATTCACTTTTTGAAGGACTGGACTTTTACACCACCATTACT 31995 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| ||| || || | | ||||| | || ||| || | || ||||| ||| Sbjct 31996 CGCGCCCGATTCGAGGAACTCAATGCTGATTTGTTCCGAAGTACTTTGGACCCAGTGGAA 32055 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 ||| |||||||| | || || | || | || | ||||| ||||| || || ||| Sbjct 32056 AAAGCGCTAAGAGATGCCAAAATGAACAAGACGCAAATTCATGAGATTGTTCTCGTGGGT 32115 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAA 552193 || || || |||| || ||||||| || || || | || |||||| || ||| | Sbjct 32116 GGTTCAACCCGAATCCCGAAAATTCAGAAATTGCTTCAAGAGTT-TTTCAACGGAAAAGA 32174 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || || || | | ||||| ||||| || || |||||||| || || |||| || || Sbjct 32175 GTTGAACAAATCTATCAATCCTGATGAAGCAGTAGCCTATGGAGCTGCCGTTCAGGCCGC 32234 Query 552254 TATTCTTTCTGGA---CAAACTGATGAAAAACTACAAAATAT--TGT-ACTTGTAGATGT 552307 |||||| ||||| ||| | ||| | ||||| | | ||| ||||| |||| Sbjct 32235 AATTCTTACTGGAGTCCAATCGGAT---ACCGTACAAGACTTGCTGTTACTTG---ATGT 32288 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 || ||| | || || ||||| ||||| | |||||| | ||||| | ||| | | Sbjct 32289 GACACCTTTGTCCCTAGGTTTGGAAACTGCGGGAGGTGTGATGACGTCGTTGATCAAACG 32348 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 ||| || ||||| || ||| || | | ||| | || || |||| ||||| | Sbjct 32349 AAACACGACTATCCCAACAAAACAAACGCAAACGTTTACCACCTACGCAGACAATCAGCC 32408 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 | |||| || || ||| ||||| ||| | | || | ||||| || | | Sbjct 32409 CGGTGTTTTGATACAGGTTTACGAAGGCGAACGTGCCATGACCAGGGATAACAACCTCTT 32468 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| |||| || ||||| || |||||||| || |||||||||||||||| Sbjct 32469 GGGAAAATTTGATTTGTCTGGGATTCCACCCGCTCCTCGAGGTATACCGCAAATTGAAGT 32528 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 || || || || || || |||||||| |||||||| Sbjct 32529 CACGTTTGACATTGACGCGAATGGAATCCTGAATGTG 32565 Score = 132 bits (146), Expect = 4e-25 Identities = 360/541 (67%), Gaps = 10/541 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || ||| || || || || | || |||| || Sbjct 74533 GCTATTGGAATCGATTTGGGCACAACCTATTCCTGCGTCGGAGTGTTCCAGCATGGGAAG 74474 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || ||||| ||| | || ||||| |||||| | || || Sbjct 74473 GTCGAGATCATTGCCAACGACCAAGGAAACCGCACAACTCCGAGTTATGTGGCGTTTACC 74414 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | ||||||||||| || | || | | ||||| ||||| Sbjct 74413 GACACCGAACGCCTCATCGGTGATGCAGCTAAGAACCAGGTTGCGATGAATCCAACCAAC 74354 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| ||||| || || || || || | | || ||||| | | || || | Sbjct 74353 ACCGTTTTCGATGCCAAGCGATTGATCGGTCGCCGATTCGATGATGCTTCGGTGCAATCC 74294 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| || ||||| ||| | ||| | | || || || | ||| ||| Sbjct 74293 GACATGAAACACTGGCCATTCAGTGTCGTTGACGACAAAGGCAAGCCGAAGATTCAAGTG 74234 Query 550292 -ACTCATGAAG-GATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | || | || | ||| | ||| || || ||| | || || |||||||||| Sbjct 74233 GAGTACAGAGGCGA---GACAAAGACATTCTCCCCCGAAGAGATATCGGCTATGGTTTTG 74177 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAAT 550407 ||||||||| | | ||| || | |||| || | || | ||||||||| | Sbjct 74176 GGGAAAATGAAGGAGATCGCCGAAGCCTAC-TTGGGCACCACCGTGAAGGATGCAGTCGT 74118 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || || || || |||||| |||||||||||||| || ||||| || ||||| Sbjct 74117 CACTGTGCCTGCCTACTTCAATGACAGTCAACGTCAAGCTACGAAGGATGCGGGTCGTAT 74058 Query 550468 TGCTGGACTT-AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 || |||| || |||| || |||||||| || || || |||||||| ||||||| | Sbjct 74057 CGC-CAACTTAAACGTTCAGCGGATTATCAACGAGCCGACGGCTGCTGCGATTGCATACG 73999 Query 550527 G 550527 | Sbjct 73998 G 73998 Score = 113 bits (124), Expect = 4e-19 Identities = 384/587 (65%), Gaps = 10/587 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | ||||| || | ||||| ||||| | ||||| || Sbjct 31117 GCGATTGGAATCGATCTGGGAACTACGTTCTCATGTGTAGGTGTGTTCCAAAACAACAAG 31176 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||||||||| ||||| ||||| ||| | || ||||| |||||| | || || Sbjct 31177 GTGGAAATTATTGCAAATGACCAAGGAAACCGCACAACTCCTAGTTATGTGGCCTTTACT 31236 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| ||| |||||||||| || || | || | || ||||| | || Sbjct 31237 GAGACGGAACGTTTGATTGGTGATGCGGCTAAGAACCAGGTTGCTATGAATCCATCTAAC 31296 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || || |||| || | || | | |||| | ||||| || | Sbjct 31297 ACGGTCTTCGATGCCAAGCGCCTAATCGGTCGTAGGTATGATGACCCCACTGTCCAAGAG 31356 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||| || ||||| ||| | | || | | ||| || || | ||| | | | Sbjct 31357 GATCGTAAAATGTGGCCATTCACACTGATTGAAGAAAATGGCAAGCCAAAAATTCAGGTC 31416 Query 550291 TACTCATGAAGGATCT--GTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | | |||| || | |||| | || | || | || || || ||||| || Sbjct 31417 GAAT-ACAAAGG-TCAAAGGAAAACGTTCTTTGCT-GAGGAGATATCCTCGATGGTGTTG 31473 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAAT 550407 | || ||||| ||| || || | | |||| |||| || | || ||||| || Sbjct 31474 ACAAAGATGAAGGAAATTGCAGAGGCCTAT-TTGGGAAAGACCGTCAGTGAGGCAGTTAT 31532 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTA 550466 ||||| || || || || ||||| ||| | ||||| || || ||||| || ||| | Sbjct 31533 CACTGTGCCGGCTTACTTCAATGATAGTCAAAGGCAAGCCACGAAGGATGCAGGGACG-A 31591 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || || ||||| || |||||||||||||| || || || || |||| || | Sbjct 31592 TTGCCGGTCTAAACGTTCTACGGATTATCAATGAACCAACAGCAGCAGCCATTGCGTACG 31651 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || ||||| | ||| | ||| || || |||||||||||| Sbjct 31652 GCCTGGATAAGAAGGCCGATAACGAAAGAAACGTTCTCATCTTTGAT 31698 >seq1546 Length=268189 Score = 152 bits (168), Expect = 4e-31 Identities = 368/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||| | || || |||||| || ||||| || | ||| |||| ||| Sbjct 177979 GCTGTTGGAATCGATCTGGGTACGACATATTCATGCGTTGGAGTGTTCCAACATGGAAAA 178038 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| |||||||| |||||||| || | || || || |||||| | || || Sbjct 178039 GTGGAAATCATTGCCAACGATCAAGGAAATCGCACAACACCCAGCTATGTTGCATTTACA 178098 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||||||||| || ||| |||||| | | ||||| | ||| Sbjct 178099 GATACCGAACGACTGATTGGTGATGCCGCTAAAAATCAAGTCGCAATGAATCCGAACAAC 178158 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || |||| || | || || || | | || ||||| || | || | | Sbjct 178159 ACCGTGTTCGATGTCAAGAGATTGATCGGTCGGCGATTCGATGATCCGTCGGTGACGTCT 178218 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT-----TG 550286 || || || ||| |||| || | || | | ||| || || | | || Sbjct 178219 GACCGTAAACACTGGTCTTTTGAAGTAGTCCAAGAAGGTGGCAAGCCAAAGGTCCGTGTG 178278 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 || ||| | | |||| | ||| || || ||||| | || || || ||||| | Sbjct 178279 GAG-TACAAAGGTGAGATCA---AGACA-TTCTCGCCAGAGGAGATATCGTCGATGGTGT 178333 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTA 550405 | | || ||||| | |||||| || | | |||| || ||| || | |||||| || Sbjct 178334 TGACTAAGATGAAGGAGACAGCCGAGGCATATCTTGG-CACGAAAGTGAAGGATGCTGTG 178392 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| || || |||||||| ||| ||||||||||| || || ||||| || Sbjct 178393 ATTACTGTTCCGGCTTATTTTAACGACAGTCAACGTCAAGCGACGAAGGATGCGGGTGCC 178452 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||||| || |||||| | ||||| ||||| ||||| || |||||||| ||||||| Sbjct 178453 ATTGCTGCTCTGAATGTTTTGCGTATCATCAACGAACCGACAGCTGCTGCGATTGCATAC 178512 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 178513 GGGCTAGACAA 178523 >seq1355 Length=477810 Score = 114 bits (126), Expect = 1e-19 Identities = 339/522 (65%), Gaps = 17/522 (3%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | || ||||| || ||||| ||||| ||||||||||| || | | Sbjct 108240 GTGTTGGTGTGTTTCAGAATGGACGGGTGGAAATAATTGCAAATGATCAAGGAAATCGGA 108299 Query 550086 CTACTCCATCTTATGTTTCTTTCACGG---AAACTGAACATTTAGTTGGTGATGCAGCAA 550142 ||| || || ||||| | ||||| | | ||||| | || || ||||| || | Sbjct 108300 TTACACCGTCGTATGTCGCATTCACAGCCGAGGGTGAACGGCTTGTCGGAGATGCTGCGA 108359 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || |||| || || || ||||| ||||| || | || || | ||||| Sbjct 108360 AAAATCAGCTGACGACAAACCCGGAAAATACCATTTTCGACGTGAAGCGACTCATTGGCC 108419 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 ||| || ||||| | | ||||| ||||| ||||||| || || | || ||| Sbjct 108420 GAACGTTCAATGAGGAGTCCGTTCAAAAGGATATCAAGCATTTCCCGTTTACAGTTATTA 108479 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGAT--CTGTTAAACAA----- 550315 | | ||||| || ||| | | |||||| | || ||||| Sbjct 108480 ACAAGAACGACAAACCATACATTCAGG-------TGAAGGTTGGCTCGGAAACACGCACG 108532 Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | || ||| |||| || | ||||| | || ||||| ||| || ||| Sbjct 108533 TTTGCTCCGGAAGAAATATCGGCAATGGTCCTCGGTAAGATGAAGGAAAGTGCTGAAGCT 108592 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | | | || || ||| ||| | || || || ||||| || || || ||||| || || Sbjct 108593 TATTTGGGCAAACCAGTCACGCACGCCGTCATTACTGTTCCCGCCTACTTTAACGATGCA 108652 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || |||||||| || || |||||||| || ||||| || || || | || || ||| Sbjct 108653 CAGCGTCAAGCCACAAAGGATGCTGGTGTCATCGCTGGTCTAAAAGTGTTGCGAATAATC 108712 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||||||||| |||||||| | ||||| || | |||||| Sbjct 108713 AATGAACCTACGGCTGCTGCCATCGCATACGGTTTGGATAAA 108754 >seq1867 Length=410790 Score = 113 bits (124), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || ||||| || || |||||| || |||||||| | ||||||| Sbjct 315246 AGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGA 315305 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||||| ||||||||||| | | ||||| ||||| || || ||||| Sbjct 315306 CCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCC 315365 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || |||||||| || ||||| |||||| ||||| | || | | ||| || || Sbjct 315366 TTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATC-GCTTGCTTCAACTTCAAGGGT 315424 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || |||||||| || || ||||| |||||||| Sbjct 315425 GATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCAT 315463 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || || ||||||||| |||||| || ||||| |||| | || | Sbjct 291439 AGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 291498 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | |||||| || || |||||||| | |||||| ||||| || || ||||| Sbjct 291499 CCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCC 291558 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||||||||| || ||| || ||||||||| ||| || | | | ||||| || Sbjct 291559 TTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTG-GCCTCGACCTCGAGGGT 291617 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| || || || || ||||| |||||| Sbjct 291618 GATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291657 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || || ||||||||| |||||| || ||||| |||| | || | Sbjct 291667 AGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 291726 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | |||||| || || |||||||| | |||||| ||||| || || ||||| Sbjct 291727 CCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCC 291786 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||||||||| || ||| || ||||||||| ||| || | | | ||||| || Sbjct 291787 TTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTG-GCCTCGACCTCGAGGGT 291845 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| || || || || ||||| |||||| Sbjct 291846 GATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 291885 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || || ||||||||| |||||| || ||||| |||| | || | Sbjct 291895 AGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 291954 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || |||||||| || || |||||||| | |||||| ||||| || || ||||| Sbjct 291955 CCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCC 292014 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||||||||| || ||| || ||||||||| ||| || | | | ||||| || Sbjct 292015 TTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTG-GCCTCGACCTCGAGGGT 292073 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| || ||||| || || || || ||||| |||||| Sbjct 292074 GATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATA 292113 Score = 100 bits (110), Expect = 2e-15 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||||| | ||| | || || |||||||| || || |||||||| | | Sbjct 291247 ATGTTGTAATCAGACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGT 291306 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| ||||| || || ||||| ||||||||||| || ||| || ||||||||| Sbjct 291307 TGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTG 291366 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| || | | | ||||| || | ||| || ||||| || || || || ||||| || Sbjct 291367 TCACTG-GCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTG 291425 Query 563472 CATA 563475 |||| Sbjct 291426 CATA 291429 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || ||||| || || |||||| || |||||||| | ||||||| Sbjct 315018 AGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGA 315077 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||||| ||||||||||| | | ||||| ||||| || || |||||| Sbjct 315078 CCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCT 315137 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || |||||||| || || || |||||| ||||| | || | | ||| || || Sbjct 315138 TTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATC-GCTTGCTTCAACTTCAAGGGT 315196 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || || || || || || || ||||| Sbjct 315197 GATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || || || ||||||||| |||||| || ||||| |||| | || | Sbjct 292123 AGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 292182 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | |||||| || || |||||||| | |||||| ||||| || || ||||| Sbjct 292183 CCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCC 292242 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAGT 563435 ||||||||||| || ||| || ||||||||| || | | || || ||||| Sbjct 292243 TTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGAC-CTCAAGAGT 292301 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || ||||| || || || || || || ||||| Sbjct 292302 GATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 >seq1332 Length=523337 Score = 100 bits (110), Expect = 2e-15 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | |||||| || ||| || ||| |||||||||| ||||| | Sbjct 494000 ACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACC 494059 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||||| | || || || |||||||| | | |||||||| |||||||| || || || Sbjct 494060 GTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTT 494119 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAGTAA 563437 ||||||||| || ||| || ||| || |||||| | | || || ||||| | Sbjct 494120 ATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC-CTCCAGAGTGA 494178 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || || || |||||||| ||||||||||| Sbjct 494179 TAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||||| || || ||||| || ||| ||||| || ||||| |||| ||||| | | Sbjct 494457 CGGAGAACGAGGTGAAGAGTCGATTCCTTTTGG--ATGTTGTAGTCAGAAAGAGTGCGTC 494514 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| || ||||| || || ||||| | | ||||||||||| ||||| ||||| | Sbjct 494515 CATCTTCTAGCTGTTTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCT 494574 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAA 563437 |||||||||| || || || ||| || |||||| | | |||||||| | Sbjct 494575 TATCTTGAATCTTAGCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTA 494634 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || | || || |||||||| ||||| Sbjct 494635 TGGTCTTTCCTGTCAACGTCTTCACGAAAATCTGCAT 494671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029066058150520