Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1456 132 6e-26 >seq1456 Length=366961 Score = 132 bits (146), Expect = 6e-26 Identities = 511/802 (64%), Gaps = 48/802 (6%) Strand=Plus/Plus Query 37005 AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGT 37064 |||| ||||| | ||||| ||||| |||||| | | |||| |||||||| | Sbjct 310669 AGCCGGTCCGCGATGAATTCGATGTAGCGACACATCAACTTGCAGTTCATACCAATCAAA 310728 Query 37065 TTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATA 37124 | ||||| | ||||| |||||| || ||||||| ||| || || |||| || Sbjct 310729 CTCACTGGCAAAGCATCCGAAAGAAACTTTTGTTCTATTTCTACCGCCTCCTTAATGATG 310788 Query 37125 TTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAACAATAAACATGCA 37181 || | | || | ||| || | || | | ||||| ||| || || || Sbjct 310789 GCAAGCACACGATCCT---TTGCAGGCTTTTGAACAATGTATTTGTACAGCAAGCAGGCG 310845 Query 37182 AAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGC 37241 || || || |||| ||| ||||| ||||| |||| |||||| || ||||| || ||| Sbjct 310846 AAGTCGCAGTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTTAACCCAGGC 310905 Query 37242 ATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCT 37301 || ||||| | |||||| | |||||||||||| || || ||||| ||||||||||| Sbjct 310906 ATCAAACCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATACCC 310965 Query 37302 TCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAt 37361 || ||||| ||||| || || | ||| | || || ||| | |||| |||||| Sbjct 310966 TCGACTGCAGCAAAGGCAACTATACGCTCCGCAAACGTAGAATGAGTATCACCAATCCAG 311025 Query 37362 ttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC-AATTGCTTTTAA--- 37417 || | ||| | ||||| ||||| || | ||| | || || || || Sbjct 311026 TTGAGCGCCCATTGCGCCTTCTGCGCGACACACTCTA-GGTTGCTGATGGCGTTGAACAG 311084 Query 37418 -----------GAGA----------------AAGttt--tt----ttCTTCACTATCTGT 37444 |||| ||| || || |||| |||| | Sbjct 311085 GAAATCCCTGCGAGAATACACAAATTAAAATAAGATTCCTTACCGTTCTGTTGGATCTTT 311144 Query 37445 TATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTG 37504 ||||| || ||||| || | |||||| || || || || || || || || ||||| Sbjct 311145 GATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTTCTCGATGGCGATCTG 311204 Query 37505 AAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAA 37564 | ||||||||||||| | || | | |||||| || | | || | || | || Sbjct 311205 CATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACTGAAACGCTCGACCAA 311264 Query 37565 GTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG 37624 || || ||||| |||||||| || |||||||| || | |||||| || || || Sbjct 311265 ATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACACATATGAGATGAAGTG 311324 Query 37625 TCTTTCATC--ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 | ||| | |||| | | ||||| ||| ||| ||| || || | ||| || || Sbjct 311325 ACGTTCGCCGACCTTGAGA--CTATTCCAGTCACTAAAATCCTTGGAGAGATCGACCTCC 311382 Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742 |||||||||||||| ||| | ||| ||||| | | ||||| ||| | | ||| Sbjct 311383 TCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTATTGG 311442 Query 37743 ATTGGAAATATTACAAATCTAT 37764 || || |||| ||||||| || Sbjct 311443 ATGGGGAATAGAACAAATCGAT 311464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592284607581920