Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq1110 334 2e-87 seq1097 230 6e-56 >seq1110 Length=2318 Score = 334 bits (370), Expect = 2e-87 Identities = 223/248 (90%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 21267 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 21326 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 21327 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAA 21386 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 21387 GTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGAT 21446 | ||| |||||||||| ||||| ||| | |||||||| |||||| ||| ||||||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 21447 GCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 21506 | || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 1848 Query 21507 GCTCTTCG 21514 ||||| || Sbjct 1849 GCTCTGCG 1856 >seq1097 Length=3195 Score = 230 bits (254), Expect = 6e-56 Identities = 242/315 (77%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 4031 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCATGCCAGGCGTC 4090 |||| || || ||||| | ||| || | |||||||| |||||||| | |||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 4091 TCTCCTAATTTATTTACCCTCCATGCTTCGGCCTTCAGCTTGTCATGAAGCTCTGTGGCC 4150 || |||| || | ||| | ||| ||| || || ||||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 4151 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTTCGGCAATGTGAA- 4209 |||| |||||||||||| |||||||| | ||||| || ||| ||| ||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 4210 AC-TGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTTCAGTTCCTCTGTTATGTC 4268 || ||| ||||| ||||| ||||||||| |||||||||| ||||||||||||| | Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 4269 ATCACCCGCGCTCACTTGGACAGTATGCAGCGGAGATTGAAGTGCCGCAACGCAGGCTTG 4328 ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 4329 TCGTGTGGTGAGGTA 4343 ||||| |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128281376169840