Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq1110 192 1e-44 >seq1110 Length=2318 Score = 192 bits (212), Expect = 1e-44 Identities = 210/279 (75%), Gaps = 24/279 (9%) Strand=Plus/Plus Query 37864 TTGATGTCATGAGTCGGTTAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCT 37923 ||||||| ||||| | | ||||||||||||||||||||| |||||||||||||||||| Sbjct 1602 TTGATGT-ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCT 1660 Query 37924 GTCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCG 37983 | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1661 GCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCG 1720 Query 37984 ATAAA---GCCACA------------------TCCACAATCGCTGACATGCAGAAGCGTC 38022 | ||| |||| | | |||| |||| ||||||| ||||| Sbjct 1721 ACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTC 1780 Query 38023 AACGTGACGTAGCAAAACTCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-G 38081 | ||||| || || ||||| || | ||| || |||||| | |||||||| || || | Sbjct 1781 AGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTG 1840 Query 38082 ACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38120 | || || ||| |||| ||||||| | ||||||||| Sbjct 1841 AAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127177433172120