Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1332 149 5e-31 seq1867 136 3e-27 >seq1332 Length=523337 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || |||||||| || ||||| ||||| || |||||||| | || ||| | Sbjct 493998 AAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 494057 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || ||||| ||||| |||||||| ||||||||||| ||||| || |||||||| || Sbjct 494058 CCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 494117 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||||||||| || ||| || | || | || ||| | || || || |||||| Sbjct 494118 TTATCTTGAATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTG 494177 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | || || ||||||| ||||| ||||| || |||||| ||||||| Sbjct 494178 ATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCATGCCACCGCGAAG 494227 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| |||||||| || ||||| || | || ||| | | || ||||||||| Sbjct 494241 TGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCCAATTGC 494300 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| |||| ||| ||||| ||||| ||||| ||||| ||||| |||||||| Sbjct 494301 TTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCCTGAATTTTC 494360 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | || ||| | ||| ||||| | ||| | ||||| || || Sbjct 494361 GCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTCCCTGTC 494420 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| || ||||||||||| Sbjct 494421 AATGTTTTGACGAATATCTGCAT 494443 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| ||||| || ||||| || | | ||| | |||| || | || Sbjct 494469 TGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCTAGCTGT 494528 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| ||||| ||||| || ||||||||||| ||||||||||| || Sbjct 494529 TTGCCCGCGAAAATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATCTTA 494588 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||| || || || || ||||| | || || || || Sbjct 494589 GCCTTCACATTCTCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTCTTTCCTGTC 494648 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 494649 AACGTCTTCACGAAAATCTGCAT 494671 >seq1867 Length=410790 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || | ||| || || ||||||||||| || |||||||||| Sbjct 315009 CCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315068 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | ||| || || ||||| ||||||||||| || || || || Sbjct 315069 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315128 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||| || || ||| | || | || || | ||| ||| Sbjct 315129 ATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACT 315188 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| ||| || ||||| | || || ||||||||||||||| Sbjct 315189 TCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCATG 315236 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||||||||| || |||||||||| | ||||| | || || | ||| Sbjct 315260 ATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACCGTCTTCAAGTTG 315319 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||||||||| || || || || |||||||| || |||||||| || Sbjct 315320 TTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTT 315379 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| | || | || || | ||| |||||||| |||| || || || || Sbjct 315380 CGCCTTTACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGATGGTCTTCCCAGT 315439 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||| ||||| Sbjct 315440 AAGTGTCTTCACGAATATTTGCAT 315463 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||||||||| || || ||||| || | | || | | || ||| Sbjct 292132 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 292191 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || || || || | || || || || || || |||||||| ||||||||| Sbjct 292192 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 292251 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | ||||| | || || |||||||||| || ||| Sbjct 292252 ATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTCTTG 292311 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || | || || ||||| |||||||| || Sbjct 292312 CCAGTCAGCGTCTTCACAAAGATCTGCATCGT 292343 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||||||||| || || ||||| || | | || | | || ||| Sbjct 291448 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 291507 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || || || || | || || || || || || |||||||| ||||||||| Sbjct 291508 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 291567 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||| | || || || || |||| || ||| Sbjct 291568 ATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTG 291627 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 291628 CCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||||||||| || || ||||| || | | || | | || ||| Sbjct 291676 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCTTCC 291735 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || || || || | || || || || || || |||||||| ||||||||| Sbjct 291736 AATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 291795 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||| | || || || || |||| || ||| Sbjct 291796 ATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTG 291855 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 291856 CCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||||||||| || || ||||| || | | || | | || || Sbjct 291904 ACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCT 291963 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | || || || || || || |||||||| ||||||||| Sbjct 291964 AGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 292023 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||| | || || || || |||| || ||| Sbjct 292024 ATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTG 292083 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 292084 CCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || ||||| || || | ||||| ||||| || || |||||||| | | ||| | | Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||| || || || || || | || || || || || || |||||||| ||| Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || ||| || | || | |||||| | || || || || |||| Sbjct 291334 TCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATA 291393 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || ||||| |||||||| Sbjct 291394 GTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396257400712236