Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq1097 333 1e-86 >seq1097 Length=3195 Score = 333 bits (368), Expect = 1e-86 Identities = 238/274 (87%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 346 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 405 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 ||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||| Sbjct 406 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 465 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 ||||||||||||||||||||| || ||||| |||||||| ||||||||||| | || Sbjct 466 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 525 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 || |||||||||||| | |||||||||||||||||||| | || || || || || || Sbjct 526 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACC 585 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTA 10028 || ||||||||||||||||| || ||||| ||| Sbjct 586 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194729145128256