Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq2230 87.8 2e-12 >seq2230 Length=66672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 197085 ATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAA 197144 || ||| || || |||| || | ||||| ||| | ||| || || ||| | || Sbjct 45064 ATCGTAGCAAGCCAGTAGAAATCCACCGTATCGTCCAGCTCTTTTACCAGACCCATGAAA 45123 Query 197145 GCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAG 197204 || || ||||| |||||||| || || |||| ||| |||| || || |||||||| Sbjct 45124 TCCACCAATAACTACCAGATCTAGCGTATCGCCCACATTGTCCAAATAGTCCTTCTTCAG 45183 Query 197205 TTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTT 197264 ||| |||||| | || | ||||||||| || ||||| | || |||| || || Sbjct 45184 TTTAAGCCAGTTGTGTGAGCGCTTGGCAATTTCATAGGTGGAATTCCGATCCAATGTTTT 45243 Query 197265 GATCATCAATCCCTCGCA 197282 || ||||||||| ||||| Sbjct 45244 GACCATCAATCCTTCGCA 45261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676692819746240