Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1332 127 2e-24 seq1873 116 3e-21 seq1520 86.0 5e-12 >seq1332 Length=523337 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || ||| || |||||||| ||||||||||| ||| | ||| |||| || Sbjct 494006 CACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTC 494065 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||||||||| || ||||| |||| ||||| ||||| | |||| ||||||||| || Sbjct 494066 CAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 494125 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| || | | | || ||||| ||||||| || || || || Sbjct 494126 AATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGACCTCCAGAGTGATAGTCTT 494185 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || | ||||| |||||||| ||||| Sbjct 494186 TCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || ||||| ||||| ||| | || | || || | ||| || || || || Sbjct 494481 TCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCTAGCTGTTTGCCCGCGAAA 494540 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||| ||||| | |||| ||| ||||| || |||||| || ||| Sbjct 494541 ATCAAGCGCTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATCTTAGCCTTCACATTC 494600 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||||| ||||| | || || || ||||| ||||| || || || Sbjct 494601 TCGATGGTATCACTCGCCTCAACCTCGAGAGTTATGGTCTTTCCTGTCAACGTCTTCACG 494660 Query 48756 AAAATCTGCATCG 48768 ||||||||||||| Sbjct 494661 AAAATCTGCATCG 494673 >seq1873 Length=396352 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| | ||| ||||| ||||| ||||||||||| Sbjct 292716 GCCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGA 292657 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| ||||| || || || |||| ||| |||||||| | || Sbjct 292656 AAGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGG 292597 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| |||||| ||| ||| | | | || || || || || Sbjct 292596 GATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAAC 292537 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | |||||| || |||||||| | || || || || ||||||||| Sbjct 292536 CTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATC 292488 >seq1520 Length=299508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 9141 ATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCAC 9200 ||||||||| || ||||| || ||||| | || || | |||| |||||||||||| || Sbjct 268123 ATTGAACAGAACAACTCCAACATTACCACGATAGTCTTGGTCGACCACACCAGCACCAAC 268182 Query 9201 GTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCC 9257 |||||| |||||||| || || ||| ||||| || | ||||||||| || || Sbjct 268183 ATCGATGCCGTGCTTGAGAGCCAGACCACTACGGGGAGCTACTCGACCGTAACAACC 268239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380917413640404