Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq1110 874 0.0 seq1097 333 1e-86 >seq1110 Length=2318 Score = 874 bits (968), Expect = 0.0 Identities = 587/652 (90%), Gaps = 5/652 (1%) Strand=Plus/Plus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 1670 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 1729 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 30036 ||| || ||| ||||||| || || | |||||||| |||||| ||| |||||||||| Sbjct 1730 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATG 1789 Query 30037 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 30096 ||||||| || ||||| | |||| ||| ||| ||||| ||||||| |||||||||||| Sbjct 1790 TTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATG 1849 Query 30097 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 30156 |||| || | ||| |||||||||||| || | ||| ||||| || ||||| Sbjct 1850 CTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCA-- 1907 Query 30157 GTCCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGG 30216 ||| ||||||||||||||| | || || |||||||||||||| || ||||||||||| Sbjct 1908 GTCA-GTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGG 1966 Query 30217 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 30276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1967 CAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAAC 2026 Query 30277 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 30336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2027 AACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGAGTTGCCCATATCGAT 2086 Query 30337 GGGCAACTCATGCAATTATTGTGAGCAATACACCCGCGCTTCCAGCGGAGTATAAATGCC 30396 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2087 GGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAGCGGAGTATAAATGCC 2146 Query 30397 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 30456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2147 TAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGTTTCTGTTTTAACAAC 2206 Query 30457 ATTTTCTGTGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 30516 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 ATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTTCTGCCCAATTCCAGA 2266 Query 30517 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTG 30568 |||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2267 AACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGCCGGTTTG 2318 >seq1097 Length=3195 Score = 333 bits (368), Expect = 1e-86 Identities = 238/274 (87%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 346 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 405 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||| Sbjct 406 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 465 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| || ||||| |||||||| ||||||||||| | || Sbjct 466 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 525 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | || || || || || || Sbjct 526 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACC 585 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTA 10529 || ||||||||||||||||| || ||||| ||| Sbjct 586 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193542006426360