Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1136 205 2e-48 >seq1136 Length=1633 Score = 205 bits (226), Expect = 2e-48 Identities = 407/603 (67%), Gaps = 0/603 (0%) Strand=Plus/Plus Query 25262 ACGCAGACGGTAATGAGGAAACAACGGTTAAAAACATTGCATTTAATTACATAGTGAGGC 25321 |||| | ||||| | ||||| || || |||||||| |||||||| || || ||||||| Sbjct 203 ACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCATTTAACTATATTGTGAGGC 262 Query 25322 TTGCATAATGACTTTTAAAATGAGCAGCAAAGCGCGGACAATTACGATTTATAACCTGCG 25381 |||||||||| | || | |||||| || | ||||| || | |||||||| |||| Sbjct 263 TTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCT 322 Query 25382 TTCAGATACGAATGAATTTATTGGGGCAGGTGATGCGTATATACCGCCACACACGGGATT 25441 | | || |||||||||||||| | ||||||||| ||||| ||||| || || || | Sbjct 323 GGCCGGAACTAATGAATTTATTGGTGAAGGTGATGCATATATTCCGCCTCATACAGGTCT 382 Query 25442 ACCGGCAAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCATATTGCTGTATT 25501 || |||||| |||| ||||||||||| || |||||||| || | | ||||| || Sbjct 383 GCCAGCAAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTCGTGGCTGTTTT 442 Query 25502 TGACGCTGAAACCGAAATGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGA 25561 || ||| | |||| ||| ||| || || || || | |||||||| || Sbjct 443 CAACAGTGATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGA 502 Query 25562 CACAACAACCGGCAATCAGGTTTATATCTCCTCTCCCGGTCCGCTACCTGAAAACGTCAC 25621 | | | || | | | | ||| || | ||||||| |||| ||||| || || Sbjct 503 CGTGGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTAC 562 Query 25622 ATCAGTTTCACCTGATGGTGAATATCAGAAATGGAATGGTAAGGCGTGGGTAAAAGACGA 25681 | | || || || || || | |||||| ||||| || | || ||||| || || Sbjct 563 CTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATAC 622 Query 25682 AGTGGCTGAAACAGCGGCCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCA 25741 | || |||| | | | | | || || || |||| ||| |||| | || |||| Sbjct 623 GGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCA 682 Query 25742 AACAGCAGCGGAGAAAATCGCGCCATTACAGGATGCTGTTGATCTTGAAATCGCAACAGA 25801 ||| ||| | || ||||| | |||||||||| ||||| ||||| ||||| || Sbjct 683 GGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGA 742 Query 25802 TGATGAGAAAGTGCAGCTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTAGA 25861 || || | | ||| || | |||||||| || |||| ||| | ||||| || || Sbjct 743 GGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGA 802 Query 25862 TAC 25864 ||| Sbjct 803 TAC 805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109047169331304