Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1456 95.1 2e-14 seq2115 89.7 1e-12 >seq1456 Length=366961 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||| Sbjct 310594 AACCCGTTCGACTTCATGGAAAACATTTCGCTCGAAGGCAAGACCAACTTCTTTGAAAAG 310535 Query 26305 AGGGTCGGCGACTATCA 26321 | || || || ||||| Sbjct 310534 CGAGTAGGTGATTATCA 310518 >seq2115 Length=135315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 |||||| || ||||||||||| ||||| || ||| |||||| ||||| || | |||| Sbjct 37836 TATACTCAATAATCTCTGTACACAGGTTACTACACCGGATGGTTCCCAGATGCTGATGAT 37895 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | ||||| | ||| ||| |||||||| ||||| |||||| || || || | ||||| Sbjct 37896 TGGACTTCCTGTTGCAAGCATCCTTGTACAGCATGAAGGGAGTTCCGGTTTCGATCTGAG 37955 Query 221868 CC 221869 || Sbjct 37956 CC 37957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928794317285120