Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq1110 159 1e-34 >seq1110 Length=2318 Score = 159 bits (176), Expect = 1e-34 Identities = 143/177 (81%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 45770 CACTACCACGGTAACGCCGTGAAATACAAAGAGCAGCGCGATACCGTTACTCATA-AGCT 45828 || |||| | ||||||| | | ||||||| |||||||| | | | || | | || Sbjct 1681 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACT 1739 Query 45829 GGCGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCATGATGTTGCTGCGCT 45888 | ||||||||||||| ||||||| || ||| || |||||||| ||||||||||||||| Sbjct 1740 GAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGATGTTGCTGCGCT 1799 Query 45889 CGACGCCAGATACACGAAGGAATTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 45945 ||| || | |||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1800 CGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCG 1856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151406582095992