Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq1131 924 0.0 >seq1131 Length=1733 Score = 924 bits (1024), Expect = 0.0 Identities = 833/1047 (80%), Gaps = 0/1047 (0%) Strand=Plus/Plus Query 1 ATGGAGGTTAACAAAAAACGCTTATCCGAAATTTTCGGGGTAAGCGTCCGAACGATTCAG 60 ||||| || |||||||| | | | || |||||||| | || |||| || |||||| Sbjct 687 ATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAG 746 Query 61 AACTGGCAGGAGCAAGGTATGCCGGTTGTCCGCGGTGGTGGCAAAGGTAATGAGGTTCTC 120 ||||||||||| || || ||||| ||| | || || |||||||| ||||||||||| || Sbjct 747 AACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTT 806 Query 121 TTTGAATCTGCTGCTGCAATCGAATGGTACAGTGCGCGCGATGCAGCTATAGAAAATGAA 180 | ||| ||||| || | || ||||||| | | ||||| | || || || ||| Sbjct 807 TATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAA 866 Query 181 AAGTTGCGGAAGGAAGTTGAAGATCTCCGTATCGCTTCTGAGTCCGATCTTCAACCTGGC 240 ||| |||| ||| |||||||| || | || ||| | ||||| || || || Sbjct 867 AAGCTGCGCCGGGAGGTTGAAGAACTGCTGCAGGCCAGCGAGACAGATCTCCAGCCAGGG 926 Query 241 ACGATTGAATATGAGCGACACCGACTTACGCGAGCTCAGGCTGACGCTCAGGAATTAAAA 300 || ||||| || || || || ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 927 ACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAA 986 Query 301 AATGCAAAAGAGTCCGCTGAAGTGGTGGAGACCGCATTCTGCACGTTCGTGCTGTCGCGG 360 ||||| | ||| ||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 987 AATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGG 1046 Query 361 GTAGCCGGAGAAATCGCCAGCATTCTCGATGGAATACCTCTGTCGGTTCAGCGGCGCTTC 420 | || || ||||| ||||| |||||||| || || || |||||||| |||||||| || Sbjct 1047 ATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTT 1106 Query 421 CCGGAGCTGGAGAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAGGCCATGAAC 480 ||||| ||||| ||||||||| |||||||||| || ||| ||||| || ||||||||| Sbjct 1107 CCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAAC 1166 Query 481 AAGGCAGCTGCGCTGGATGAAATGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCA 540 || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1167 AAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCA 1226 Query 541 GGTTAAGGGGCTGCAGCACTCTGCGCGGGCGGGGTTACGTTCGCTGTACCGGCCGCAACC 600 |||||| |||||| ||| | || || || ||| | || || |||| | ||||| | || Sbjct 1227 GGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCC 1286 Query 601 GCAAACAGCAGTTGAATGGGCAGATGAGAATTATTATCTCCCGAAAGAGTCTGCCTACCA 660 || || || ||||||||||| |||| ||||| |||||||||||||| || || ||||| Sbjct 1287 ACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCA 1346 Query 661 GGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATGGGTAATGA 720 |||||||||||||||||||||||| |||||||| || || |||||||||||||| | || Sbjct 1347 GGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGA 1406 Query 721 CTATATTCGCGAGGTGAATGTCGTTAAATCGGCTCGTGTCGGCTACTCAAAAATGTTGCT 780 ||| || || ||||||||||| || || || || |||||||| || || |||||| |||| Sbjct 1407 CTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCT 1466 Query 781 CGGCGTTTACGCATATTTCATCCAACATAAACAGCGTAACTCCCTAATATGGTTACCAAC 840 || ||||| || || || || | ||||| ||||| ||| |||| || ||||| || || Sbjct 1467 GGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGAC 1526 Query 841 CGACGGTGATGCTGAAAACTTCATGAAGTCTCATGTAGAACCGACCATTCGTGATATTCC 900 || |||||||| || ||||| ||||| | || || || ||||| |||||||||||||| Sbjct 1527 GGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCC 1586 Query 901 GACGTTGCTGGCGCTTGCTCCCTGGTACGGTAAAAAACACCGGGACAATACGCTGAGCAT 960 | || |||||||||| || || ||||| || ||||| |||||||| || ||||| | ||| Sbjct 1587 GTCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCAT 1646 Query 961 GAAGCGTTTCTCGAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGGCTGCAAAAAACTA 1020 |||||||||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| Sbjct 1647 GAAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTA 1706 Query 1021 CCGTGAAAAATCAGTTGATGTGGCTGG 1047 ||||||||| || || |||||||| || Sbjct 1707 CCGTGAAAAGTCGGTGGATGTGGCGGG 1733 Score = 168 bits (186), Expect = 2e-37 Identities = 174/225 (77%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 44138 ATGATAATCATTATCA-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTACGGGGCGGCG 44196 |||||||||||||||| ||| |||||||||||||| |||||| | |||||||||||||| Sbjct 446 ATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCG 505 Query 44197 TCCGCGCAGATTCTCGCTATTTATGAAAATTTTCTGGTTTATGCCATTTCCGTTCTTCTT 44256 || ||| | || ||||||||||||||||||||| |||||| | | |||||||||||||| Sbjct 506 ACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTT 565 Query 44257 CTTGTTTACTCATTGTTTTTGTTAAAAACGTCCTCTCTCCAGAAAGGAAATGCTGAGCAA 44316 | | | ||| | ||||||| || |||| ||||| |||||||||| | | Sbjct 566 CGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACGACAGGTGC 625 Query 44317 GGAAAACG-GAAGTTTACCGTTGATTGTTTCCTTTCTCTGTTTTT 44360 |||| || | ||| | | | ||||||||||||||||||| Sbjct 626 TGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTT 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141871074463512