Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq1110 266 8e-67 >seq1110 Length=2318 Score = 266 bits (294), Expect = 8e-67 Identities = 232/288 (81%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 35990 GTCAGAGAGATTGAGGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 36049 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 36050 TCATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 36109 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 36110 CCCAGCGCGACAAA---GCCACA----TCCATC--------------ATCGCTGACATGC 36148 |||||||||||||| |||| | | | | || |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 36149 AGAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATG 36208 ||| |||||| |||||||| || | || || || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 36209 CTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 36255 | || || || || || ||| |||| ||||||| | ||||||||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123900802361496