Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq1097 580 3e-161 seq1110 257 4e-64 >seq1097 Length=3195 Score = 580 bits (642), Expect = 3e-161 Identities = 368/399 (92%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 33489 TACGAGTATTGCCGGAAGCGAGGCCTGTATCCGGATGCGGAGTCTTATCCGTGGAAATCA 33548 |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 618 TACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCG 677 Query 33549 AACGCGCACTACTGGCTGGTTACCAACCTGTATCAGAACATGCGGGCCAATGCGCTTACT 33608 |||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||| || Sbjct 678 AACGCGCATTACTGGTTGGTTACCAACTTGTACCAGAACATGCGGGCCAATGCGCTGGCT 737 Query 33609 GATGCGGAATTACGCCGTAAGGCCGCAGATGAGCTTGTCCATATGACTGCGAGAATTAAC 33668 || ||||||||||| || ||||| || ||||| || | |||||| ||| |||||||| Sbjct 738 GACGCGGAATTACGGCGCAAGGCTGCCGATGAACTGACCTGTATGACAGCGCGAATTAAC 797 Query 33669 CGTGGTGAGGCGATCCCTGAACCAGTAAAACAACTTCCTGTCATGGGCGGTAGACCTCTA 33728 ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 798 CGTGGTGAGACGATACCTGAACCAGTAAAACAACTTCCTGTTATGGGCGGTAGACCTCTA 857 Query 33729 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAAGTTCGGACTGAAAGGA 33788 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 858 AATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGA 917 Query 33789 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAATAGCTTCT 33848 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 918 GCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCT 977 Query 33849 GTGCGCCGGACGTTGCCGCGCTAACAGGCGCAACAGTAA 33887 |||| | ||||||||||||| ||||||||||||| |||| Sbjct 978 GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAA 1016 >seq1110 Length=2318 Score = 257 bits (284), Expect = 4e-64 Identities = 230/288 (80%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 38837 GTCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCA 38896 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 38897 TCATCGTTTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 38956 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 38957 CCCAGCGCGATAAA---GCCA---------------CGTAC---ATCATCGCTGACATGC 38995 |||||||||| ||| |||| || || || |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 38996 AGAAGCGTCAACGTGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATG 39055 ||| |||||| |||||||| || | ||||| || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 39056 CTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 39102 | || || || || || ||| |||| ||||||| | ||||| ||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130143680009472