Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq1131 1862 0.0 seq1110 1214 0.0 seq1136 1050 0.0 >seq1131 Length=1733 Score = 1862 bits (2064), Expect = 0.0 Identities = 1041/1047 (99%), Gaps = 0/1047 (0%) Strand=Plus/Plus Query 1 ATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 ATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAG 746 Query 61 AACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 AACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTT 806 Query 121 TATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 TATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAA 866 Query 181 AAGCTGCGCCGGGAGGTTGAAGAACTGCGGCAGGCCAGCGAGGCAGATCTCCAGCCAGGA 240 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 867 AAGCTGCGCCGGGAGGTTGAAGAACTGCTGCAGGCCAGCGAGACAGATCTCCAGCCAGGG 926 Query 241 ACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAACTGAAG 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 927 ACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAA 986 Query 301 AATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 AATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGG 1046 Query 361 ATCGCAGGTGAAATTGCCAGTATTCTCGACGGGCTCCCCCTGTCGGTGCAGCGGCGTTTT 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1047 ATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTT 1106 Query 421 CCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 CCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAAC 1166 Query 481 AAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1167 AAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCA 1226 Query 541 GGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 GGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCC 1286 Query 601 ACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 ACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCA 1346 Query 661 GGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 GGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGA 1406 Query 721 CTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1407 CTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCT 1466 Query 781 GGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1467 GGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGAC 1526 Query 841 GGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1527 GGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCC 1586 Query 901 GTCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCAT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1587 GTCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCAT 1646 Query 961 GAAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1647 GAAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTA 1706 Query 1021 CCGTGAAAAGTCGGTGGATGTGGCGGG 1047 ||||||||||||||||||||||||||| Sbjct 1707 CCGTGAAAAGTCGGTGGATGTGGCGGG 1733 Score = 1231 bits (1364), Expect = 0.0 Identities = 682/682 (100%), Gaps = 0/682 (0%) Strand=Plus/Plus Query 46603 CACTGTCAGGAAAGTGGTAAAACTGCAACTCAATTACTGCAATGCCCTCGTAATTAAGTG 46662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACTGTCAGGAAAGTGGTAAAACTGCAACTCAATTACTGCAATGCCCTCGTAATTAAGTG 60 Query 46663 AATTTACAATATCGTCCTGTTCGGAGGGAAGAACGCGGGATGTTCATTCTTCATCACTTT 46722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATTTACAATATCGTCCTGTTCGGAGGGAAGAACGCGGGATGTTCATTCTTCATCACTTT 120 Query 46723 TAATTGATGTATATGCTCTCTTTTCTGACGTTAGTCTCCGACGGCAGGCTTCAATGACCC 46782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TAATTGATGTATATGCTCTCTTTTCTGACGTTAGTCTCCGACGGCAGGCTTCAATGACCC 180 Query 46783 AGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGCGATGTTAATTTGTTCAATCATTT 46842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGGCTGAGAAATTCCCGGACCCTTTTTGCTCAAGAGCGATGTTAATTTGTTCAATCATTT 240 Query 46843 GGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTCGTTGACATGA 46902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGTTAGGAAAGCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTCGTTGACATGA 300 Query 46903 GGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACGTTAAGTT 46962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGTTGCCCCGTATTCAGTGTCGCTGATTTGTATTGTCTGAAGTTGTTTTTACGTTAAGTT 360 Query 46963 GATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGTTTGATGG 47022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGTGGTTTGATGG 420 Query 47023 CCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGG 47082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTCCACGCACGTTGTGATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGG 480 Query 47083 TGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCC 47142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCC 540 Query 47143 GGTTTAAGGCGTTTCCGTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTC 47202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGTTTAAGGCGTTTCCGTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTC 600 Query 47203 TGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTT 47262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTT 660 Query 47263 CTCTGTTTTTGTCCGTGGAATG 47284 |||||||||||||||||||||| Sbjct 661 CTCTGTTTTTGTCCGTGGAATG 682 >seq1110 Length=2318 Score = 1214 bits (1346), Expect = 0.0 Identities = 701/727 (96%), Gaps = 0/727 (0%) Strand=Plus/Plus Query 44546 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 44605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 44606 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 44665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 44666 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 44725 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 44726 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 44785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 44786 CTAAAGCTGAAAATGATGCTCTGCGTGATNNNNNNNNNNNNNNNNNNNNNNGGTTGCACA 44845 | ||||||||||||||||||||||||||| ||||||||| Sbjct 1832 CGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACA 1891 Query 44846 TCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG 44905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1892 TCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG 1951 Query 44906 CCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGA 44965 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1952 CCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGA 2011 Query 44966 TCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGA 45025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2012 TCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAGA 2071 Query 45026 GCTGACCATATCGATGGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAG 45085 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2072 GTTGCCCATATCGATGGGCAACTCATGCAATTATTGTGAGCAATACACACGCGCTTCCAG 2131 Query 45086 CGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGT 45145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2132 CGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATTTACGAATGTTTGCTGGGT 2191 Query 45146 TTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTT 45205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2192 TTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCTGCATCGACAGTTTTCTT 2251 Query 45206 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGC 45265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2252 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGC 2311 Query 45266 CGGTTTG 45272 ||||||| Sbjct 2312 CGGTTTG 2318 >seq1136 Length=1633 Score = 1050 bits (1164), Expect = 0.0 Identities = 624/652 (96%), Gaps = 0/652 (0%) Strand=Plus/Plus Query 21699 GGACACACCATCACCGTTAACGCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGCA 21758 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 184 GGACACACCATCACCGTTAACGCTGCTGGTAACGCGGAAAACACCGTCAAAAACATCGCA 243 Query 21759 TTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCA 21818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCA 303 Query 21819 TAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGACGCATATA 21878 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 304 TAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGATGCATATA 363 Query 21879 TTCCGCCTCATACCGGTCTGCCTGCAAACAGTACCGATATTGCACCGCCAGATATTCCGG 21938 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 364 TTCCGCCTCATACAGGTCTGCCAGCAAACAGTACCGATATTGCACCGCCAGATATTCCGG 423 Query 21939 CTGGCTTTGTGGCTGTTTTCAACAGTGATGAGGCATCGTGGCATCTCGTTGAAGACCATC 21998 ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 424 CTGGCTTCGTGGCTGTTTTCAACAGTGATGAGTCATCGTGGCATCTCGTTGAAGATCATC 483 Query 21999 GGGGTAAAACCGTCTATGACGTGGCTTCCGGCGACGCGTTATTTATTTCTGAACTCGGTC 22058 |||||||||| || ||||||||||| || || |||||||||||||||||||||||||||| Sbjct 484 GGGGTAAAACGGTTTATGACGTGGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTC 543 Query 22059 CGTTACCGGAAAATTTTACCTGGTTATCGCCGGGAGGGGAATATCAGAAGTGGAACGGCA 22118 |||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| Sbjct 544 CGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCA 603 Query 22119 CAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAA 22178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 CAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAA 663 Query 22179 CaaaaaaaaGCCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAG 22238 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAG 723 Query 22239 ATCTGGAAATTGCAACGGAGGAAGAAACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGG 22298 ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| Sbjct 724 ATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGG 783 Query 22299 TGTTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTGC 22350 | |||||||||||||||||||| |||||||||| |||||||| ||||| || Sbjct 784 TATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGC 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151192193166000