Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq1110 242 9e-60 >seq1110 Length=2318 Score = 242 bits (268), Expect = 9e-60 Identities = 225/288 (78%), Gaps = 23/288 (8%) Strand=Plus/Plus Query 36806 GTCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCA 36865 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 36866 TCATCGTCTGCCTGTCATGGGCGGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 36925 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 36926 AGCAGCGCGATAA---------------------GGCCACATCCACAATCGCTGACATGC 36964 |||||||| || ||| | | |||| |||| |||| Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGC 1771 Query 36965 AGAAGCGTCAACATGATGTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATG 37024 ||| |||||| | |||||| || | ||||| || | |||||| |||||| | ||||||| Sbjct 1772 AGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATG 1831 Query 37025 CTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGGCGT 37071 | || || || || || ||| |||| ||||||| | ||||| ||| Sbjct 1832 CGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126521467043040