Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq1110 293 7e-75 seq1136 150 5e-32 >seq1110 Length=2318 Score = 293 bits (324), Expect = 7e-75 Identities = 219/257 (85%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 43244 GATAGATGAGTGAGCAGAGTCGCCGCGATTATTTATGCTCTGGTTATCTGCATCATCGTC 43303 ||| |||| ||||||||||| |||||||||| | |||||||||||||||||||||||| Sbjct 1600 GATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTC 1659 Query 43304 TGCCTGTCGTGGGCGGTCAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGT 43363 |||||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||| Sbjct 1660 TGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGC 1719 Query 43364 GATAAAAAAGTCAGTGAGCTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAACGC 43423 || ||||| | ||| || ||||||| ||||| ||| | |||||||| |||||| || Sbjct 1720 GACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGT 1779 Query 43424 CAGCGTGCTGCTGATGTACTCGATGCTAAATACACGAAGGAGTTGGCTGATGCGAAAGCT 43483 ||||||| || || || |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1780 CAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCT 1839 Query 43484 GAAAATGATGCTCTTCG 43500 |||||||||||||| || Sbjct 1840 GAAAATGATGCTCTGCG 1856 >seq1136 Length=1633 Score = 150 bits (166), Expect = 5e-32 Identities = 107/123 (87%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22732 TTCAGACTGTTGTTGAGCTGGAAATCGCAACGGAGGAAGAAACTTCGTTGCTGGAAGTCT 22791 ||||| || || || |||||||| |||||||||||||||| ||||||||||||| | Sbjct 709 TTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCAT 768 Query 22792 GGAAAAAGTATCGGGTGTTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGT 22851 |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| | Sbjct 769 GGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAAT 828 Query 22852 GGC 22854 ||| Sbjct 829 GGC 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142303052158272