Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq1131 973 0.0 >seq1131 Length=1733 Score = 973 bits (1078), Expect = 0.0 Identities = 846/1048 (81%), Gaps = 2/1048 (0%) Strand=Plus/Plus Query 1 ATGGAGGTTAACAAAAAACGCTTATCCGAAATTTTCGGGGTGAGCGTCCGAACGATTCAG 60 ||||| || |||||||| | | | || |||||||| | ||| |||| || |||||| Sbjct 687 ATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAG 746 Query 61 AACTGGCAGGAACAAGGTATGCCGGTTGCCCGCGGTGGTGGCAAGGGTAATGAGGTTCTC 120 |||||||||||||| || ||||| ||| || || |||||||||||||||||||| || Sbjct 747 AACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTT 806 Query 121 TTTGAATCTGCTGCCGCAATCGAATGGTACAGTGCGCGCGATGCAGCCATAGAAAATGAA 180 | ||| ||||| |||| || ||||||| | | ||||| | || || || ||| Sbjct 807 TATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAA 866 Query 181 AAGTTGCGGAAGGAAGTTGAAGATCTCC-GCATTGCTTCTGAGTCCGATCTTCAACCTGG 239 ||| |||| ||| |||||||| || | ||| | | ||| | ||||| || || || Sbjct 867 AAGCTGCGCCGGGAGGTTGAAGAACTGCTGCAGGCCAGC-GAGACAGATCTCCAGCCAGG 925 Query 240 CACGATTGAATATGAGCGACACCGACTTACGCGAGCTCAGGCTGACGCTCAGGAATTAAA 299 || ||||| || || || || ||||||||||| || ||||| ||||| ||||| | || Sbjct 926 GACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAA 985 Query 300 AAATGCAAAAGAGTCCGCTGAAGTGGTGGAGACCGCATTCTGCACGTTCGTGCTGTCGCG 359 |||||| | ||| ||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 986 AAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCG 1045 Query 360 GGTAGCCGGAGAAATTGCCAGCATTCTCGATGGAATACCTCTGTCGGTTCAGCGGCGCTT 419 | | || || ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 1046 GATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTT 1105 Query 420 CCCGGAGCTGGAGAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAGGCCATGAA 479 ||||| ||||| ||||||||| |||||||||| || ||| ||||| || |||||||| Sbjct 1106 TCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAA 1165 Query 480 CAAAGCAGCTGCGCTGGATGAAATGATACCGGGGTTGCTGAGTGAATATATCGAACAGTC 539 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1166 CAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTC 1225 Query 540 AGGTTAAGGGGCTGCAGCACTCTGCGCGGGCGGGGCTACGTTCGCTTTACCGGCCAGAAC 599 ||||||| |||||| ||| | || || || ||||| || || || | | |||| || | Sbjct 1226 AGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGC 1285 Query 600 CGCAAACAGCGGTTGAATGGGCAGATGAGAATTACTATCTCCCGAAAGAGTCTGCCTACC 659 | || || || ||||||||||| |||| |||||||||||||||||||| || || |||| Sbjct 1286 CACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACC 1345 Query 660 AGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATGGGCAATG 719 ||||||||||||||||||||||||| |||||||| || || |||||||||||||||| | Sbjct 1346 AGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCG 1405 Query 720 ACTATATCCGCGAAGTGAATGTCGTTAAATCTGCTCGTGTCGGCTACTCAAAAATGTTGC 779 |||| ||||| || |||||||| || || ||||| |||||||| || || |||||| ||| Sbjct 1406 ACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGC 1465 Query 780 TCGGCGTTTACGCATATTTCATCCAGCATAAACAGCGTAACTCCCTAATATGGTTGCCAA 839 | || ||||| || || || || ||||||| ||||| ||| |||| || |||||||| | Sbjct 1466 TGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGA 1525 Query 840 CCGACGGTGACGCTGAAAACTTCATGAAGTCTCATGTCGAACCGACCATTCGTGATATTC 899 | || ||||| || || ||||| ||||| | || || || ||||| ||||||||||||| Sbjct 1526 CGGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTC 1585 Query 900 CGACGCTGTTGGCGCTTGCTCCTTGGTACGGCAAAAAACACCGGGACAATACGCTTAGCA 959 || ||||| ||||||| || || ||||| |||||||| |||||||| || ||||| | || Sbjct 1586 CGTCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCA 1645 Query 960 TGAAGCGTTTCTCAAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGGCTGCAAAAAACT 1019 ||||||||||| | ||||| ||||| |||||||||||||||||||| || |||||||||| Sbjct 1646 TGAAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACT 1705 Query 1020 ACCGTGAAAAATCCGTTGATGTGGCTGG 1047 |||||||||| || || |||||||| || Sbjct 1706 ACCGTGAAAAGTCGGTGGATGTGGCGGG 1733 Score = 161 bits (178), Expect = 3e-35 Identities = 144/179 (80%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 45120 GATGTGTAAGTGATAATTATTATCG-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTAC 45178 ||| |||| ||||||| |||||| ||| |||||||||||||| |||||| | ||||| Sbjct 437 GATATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTAC 496 Query 45179 GGGGCGGCGTCCGCGCAGATTCTCGCTATTTATGAAAATTTTCTGGTTTATGCCATTTCC 45238 ||||||||| || ||| | || ||||||||||||||||||||| |||||| | | ||||| Sbjct 497 GGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCC 556 Query 45239 GTTCTTCTTCTTGTTTACTCATTGTTTTTGTTAAAAACGTCCTCTCTCCAGAAAGGAAA 45297 |||||||||| | | ||| | ||||||| || |||| ||||| |||||||||| Sbjct 557 GTTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAA 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145042110726528