Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq1110 107 5e-19 >seq1110 Length=2318 Score = 107 bits (118), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38713 TGGTCAGCTAATCATTACCACAATAAAGCCATTGAATACAAAAAACAGCGCGACGAAAAC 38772 ||| | | ||||||||||| |||| |||||| |||||| ||||||||| |||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 38773 GCTATGGCATTAGATTCGGCTATGGCGACGATCTCTGATATGCAGAAGCGTCAACGTGAC 38832 || | | | | | ||| | ||| | || |||| ||||||| |||||| ||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 38833 GTAGCAGAACTCGATGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38891 || || | |||||||| | ||| || |||||| | |||||||| || || || || || Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAAT-GA 1847 Query 38892 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38922 ||| |||| ||||||| | ||||||||| Sbjct 1848 TGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132761144856240