Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq1110 217 4e-52 >seq1110 Length=2318 Score = 217 bits (240), Expect = 4e-52 Identities = 222/291 (76%), Gaps = 29/291 (10%) Strand=Plus/Plus Query 42068 GTCAGAGAGATTGAGGTATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCA 42127 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1592 GTCAGAGAGATTGATGTATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCA 1651 Query 42128 TCATCGTCAGCCTGTCATGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAG 42187 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1652 TCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAG 1711 Query 42188 AACAGCGCGATAA---------------------GGC---CGCATTCATTATCGCTGACA 42223 |||||||| || ||| ||| |||| |||| | Sbjct 1712 CCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA---CTGAGA 1768 Query 42224 TGCAGAAACGTCAACGCAATGTAGCAGAACTCGACGCCAGATATACAAAGGAGCTTGCTG 42283 |||||| ||||| || |||| || | ||||| || | ||| || |||||| | |||| Sbjct 1769 TGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTG 1828 Query 42284 ATGCTAACGC-GACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 42333 |||| || || || || || ||| |||| ||||||| | ||||||||| Sbjct 1829 ATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGATGTTGCCGCTGGTCGT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141055116595632