Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq1097 214 5e-51 >seq1097 Length=3195 Score = 214 bits (236), Expect = 5e-51 Identities = 217/280 (78%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 11514 TCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTC 11573 ||| | |||||| || || || || ||||| || || || ||| |||||||||||| Sbjct 340 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 399 Query 11574 AATGAACTCTGGCACCGCTTCCGTGAAGTCTT-CCATGTACTTTTCATCACGCTCGACAA 11632 |||||||| |||||| || || || || ||||||||||||||| ||||| | | Sbjct 400 GATGAACTCCGGCACCATCTC-GTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCA 458 Query 11633 CGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGT 11692 |||||| ||| || ||||| ||| |||| ||||||||||| || | |||||||||||| | Sbjct 459 CGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAT 518 Query 11693 CCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTT 11752 || | || |||||||||||| |||||||||| |||||||| ||||| || || || | Sbjct 519 TTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCT 578 Query 11753 CAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGT 11792 | || || ||||| |||||||||||||| || || || || Sbjct 579 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGT 618 Score = 203 bits (224), Expect = 1e-47 Identities = 236/315 (75%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 8480 TTATGTGCCTTTTCCTCAAGCCACCTGACACACGCTTCCTCGAATGTCATGTCCGGAGTC 8539 |||| || |||||||||||||| || | || || || || || || | || || Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 8540 TCGCCCAGCTTGCTTACTCGCCAGGCTTCGGCCTTCAGCTTGTCATGGAGTTCCGTGGCC 8599 || || ||||| |||||||||| ||| || || ||||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCT 122 Query 8600 TGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCGTCCGGCAATGTGAA- 8658 |||| |||||||||||| |||||||| | ||||| || ||| ||| |||| | | ||| Sbjct 123 TGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAAT 180 Query 8659 AC-TGGCGTACCAGGTCTCACCTCTGCGGAAGAGTGACATATCAATTCCTCTCGTATGCC 8717 || ||| ||||| | ||| |||||||||||||||||| | ||||||| |||||| Sbjct 181 ACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCC 240 Query 8718 ATCACCCGCGCTCACGGCGACAGTATGCAGCGGAGATTTCAGGGCTGCAATGCAAGCCTG 8777 ||||||||||||||| |||||||||||||||||| | || || |||||||| || || Sbjct 241 ATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTG 300 Query 8778 GCGAGTGGTGAGGTA 8792 || || |||||||| Sbjct 301 CCGTGTTGTGAGGTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152225739798648