Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq1131 1097 0.0 seq1097 246 9e-61 seq1110 147 6e-31 >seq1131 Length=1733 Score = 1097 bits (1216), Expect = 0.0 Identities = 987/1237 (80%), Gaps = 2/1237 (0%) Strand=Plus/Plus Query 1 GGGCGGCGACCTCGCAGATTCTCGCTATTTATGAAAATTTTCAGGCATTTGCCGTTTCCG 60 ||||||||||||||| | || ||||||||||||||||||||| || | | |||||||| Sbjct 498 GGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCG 557 Query 61 TTCTTCTTCTCGCTAATTCATTGTTTTAACTGTAAACACCCCCTGAAAAGAAAGGAAATG 120 ||||||||| ||| | | |||||| | | ||| |||| |||||||||||||||| | Sbjct 558 TTCTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACG 617 Query 121 ATAAGCCTTAAAAACG-GCTAAATAGCCAGAGGGCGTTTCCTTTCTCTGTTTTTGTGTAT 179 | | | | ||| || ||| | ||| | |||||||||||||||||||||| | Sbjct 618 ACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGT-CGTTTCCTTTCTCTGTTTTTGTCCGT 676 Query 180 GGAGTGAGCTATGGAGGTCAACAAAAAGCGTCTTTCTGAAATATTTGGGGTCAGCGTGCG 239 ||| || || ||||| ||||||||||||| || |||| || || || | || | || Sbjct 677 GGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCG 736 Query 240 AACCATTCAGAACTGGCAGGATCAGGGAATGCCTGTAGCACGTGGCGGTGGAAAAGGTAA 299 |||||||||||||||||||| ||||||||||| || || |||||||| || ||||| Sbjct 737 TACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAA 796 Query 300 TGAGGTCCTCTATGAATCTTCCGCGGCTATCGAATGGTATTCCGCACGCGACGCGGCGAT 359 |||||| || ||||| ||| |||| | || |||||||| ||| | | || || | || Sbjct 797 TGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAAT 856 Query 360 TGAGAATGAGAAATTACGGAAGGAGGTGGAAGACCTTCGTCTTGCATCGGAATCCGACCT 419 |||||| || || | || |||||| ||||| || | | || || | || || Sbjct 857 TGAGAACGAAAAGCTGCGCCGGGAGGTTGAAGAACTGCTGCAGGCCAGCGAGACAGATCT 916 Query 420 TCAGCCTGGTACGATTGACTATGAGCGTCACCGCCTCACCCGAGCGCAGGCAGATGCCCA 479 ||||| || || ||||| || || || || || || || || |||||||| || || || Sbjct 917 CCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACA 976 Query 480 GGAACTAAAAAATGCAAAAGATTCCGCTGAGGTGGTGGAAACCGCATTCTGCACGTTCGT 539 ||| || |||||||| | ||| |||||||| |||||||||||||||||||| || ||||| Sbjct 977 GGAGCTGAAAAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGT 1036 Query 540 GCTGTCGCGGATGGCCGGAGAAGTAGCCAGCATTCTTGATGGAGTTCCTCTGTCGGTTCA 599 |||||||||||| || || ||| | ||||| ||||| || || | || |||||||| || Sbjct 1037 GCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCA 1096 Query 600 GCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAA 659 |||||| || ||||| ||||||||||||||| |||||||||| || ||| ||||| || Sbjct 1097 GCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAA 1156 Query 660 AGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATAT 719 |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| Sbjct 1157 AGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATAT 1216 Query 720 CGAACAGTCAGGTTAAGGGGCTGCAGCACTCTGCGCGCGCGGGTCTACTTTCGCTGTACC 779 |||||||||||||||| |||||| ||| | || ||||| || || | || |||| | Sbjct 1217 CGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCA 1276 Query 780 GACCTGAGCCGCAAACGGCGGTTGAATGGGCAGACGATAATTACTATCTCCCCAAAGAGT 839 | || ||||| || || || ||||||||||| || | ||||||||||||||| ||||| | Sbjct 1277 GGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAAAGAAT 1336 Query 840 CGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGA 899 | || ||||||||||||||||||||||| |||| ||||| || || ||||||||||||| Sbjct 1337 CCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGA 1396 Query 900 TGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAA 959 |||| | ||| ||||| |||||||| || || || |||||||||||||| || ||||| | Sbjct 1397 TGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCA 1456 Query 960 AAATGTTGCTGGGTGTTTATGCGTATTTTATTCAGCACAAGCAGCGAAATTCCCTTATCT 1019 ||||| |||||||||||||||| || ||||| |||| |||||||| || ||||||||| Sbjct 1457 AAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCTTATCT 1516 Query 1020 GGCTGCCTACTGATGGTGACGCCGAAAACTTTATGAAGTCGCATGTTGAGCCGACGATTC 1079 || |||| || |||||||| ||||| ||||||||||| | || ||||||||||| |||| Sbjct 1517 GGTTGCCGACGGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACTATTC 1576 Query 1080 GCGATATTCCGTCACTTCTGGCGCTGGCCCCCTGGTATGGAAAAAAGCACCGGGACAATA 1139 | ||||||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct 1577 GTGATATTCCGTCGCTGCTGGCGCTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACA 1636 Query 1140 CGCTCAGTATGAAACGCTTCTCCAACGGTCGCGGGTTCTGGTGTCTGGGTGGTAAAGCGG 1199 |||||| ||||| || ||| | || || || || |||||||| ||||| |||||||||| Sbjct 1637 CGCTCACCATGAAGCGTTTCACTAATGGGCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGG 1696 Query 1200 CGAAAAACTATCGTGAGAAATCGGTCGATGTCGCCGG 1236 | |||||||| ||||| || ||||| ||||| || || Sbjct 1697 CAAAAAACTACCGTGAAAAGTCGGTGGATGTGGCGGG 1733 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 46081 TATGCAATTGATAATTATTATCA-TTTGCGGGTCCTTTCCGGCGATCCGCCTTGTTACGG 46139 |||| | ||||||| ||||||| ||| |||||||||||||| |||||| | ||||||| Sbjct 439 TATGTAGATGATAATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGG 498 Query 46140 GGCGGCGACCT 46150 ||||||||||| Sbjct 499 GGCGGCGACCT 509 >seq1097 Length=3195 Score = 246 bits (272), Expect = 9e-61 Identities = 222/279 (80%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 27950 TCATTTCCACTGTTCCCCGAACGTGAAGCCGATCTCTGCCAGCGCCTCGTCCATCTTCTC 28009 |||| ||| || ||||| || || || || || ||||| ||||||||||| || || Sbjct 340 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 399 Query 28010 GATGAACTCCGGCACCATTTCGTTGAAATCGGACATGTACTGAGGATCCCGCTCAACGAC 28069 |||||||||||||||||| |||| ||| | |||||||| || |||||||| || Sbjct 400 GATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCAC 459 Query 28070 GACGTGGTGAATGCCTTCGCGTTTCATGCGCGGGTCGTAGTTTGCAAAGAACCATGCGTC 28129 ||| | || | |||||| || ||||| |||||||| ||||| |||||| |||| || | Sbjct 460 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATT 519 Query 28130 TTTTCCGGTCACCCACATGCTGTACTGCACCTGGGCCATGTACGCAGACTTGATGGCTTC 28189 ||||| ||||||||||||||||||||||||||||||||||| || || || || || || Sbjct 520 TTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTC 579 Query 28190 GAAACCGCCAAGGCGGAATTTCATGAAGTCGCGGGAGGT 28228 |||||| || || |||||||||||||| || |||||||| Sbjct 580 GAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGT 618 >seq1110 Length=2318 Score = 147 bits (162), Expect = 6e-31 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43118 ATGAGCCGATTAACCGCAATCATCTGCGCTGTCGTTATCTGCCTGCTGGTTTCCATGGCC 43177 |||||| || | ||||| || |||| |||| | ||||||||| | | || | | || | Sbjct 1609 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 1668 Query 43178 TGGGCCATTAACCACTACCGCGACAACGCCATCACCTACAAAGACCAGCGCGACAAAGCC 43237 ||||| |||| || ||||| || |||||||| |||||||||| ||||||||||||| Sbjct 1669 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 1728 Query 43238 ACCAAAAGTCTCCGCCTGGCTAACGACACCATCAAAGACATGCAGACCCGTCAGCGTGAT 43297 ||| | || ||||| |||| | || | || ||||||| |||||||||||| Sbjct 1729 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGAGATGCAGATGCGTCAGCGTGAT 1788 Query 43298 GTCGCTGCACTGGATGCCAAATACACCGGAGAACTGGCTGATGCGAAAG 43346 || ||||| || ||||| |||||||| || | ||||||||||||| Sbjct 1789 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAG 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147550781190912