Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1456 89.7 8e-13 >seq1456 Length=366961 Score = 89.7 bits (98), Expect = 8e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 18412 TTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCT 18471 |||| | | |||||| ||||| ||||| || | | |||||||| || ||||||||| | Sbjct 311130 TTCTGTTGGATCTTTGATATATGTGTCAATCAGAAGTGAATACATCTCTGAATGTATGTT 311189 Query 18472 TTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATA 18531 || || || ||||| | | |||||| | | |||| ||| ||||| || | Sbjct 311190 CTCGATGGCGATCTGCATCCCATAAAAACACCGGACCTCCGGAACTTGAACTTCTTGACT 311249 Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 || | || ||||||||||| ||||| || ||| | || || || || || || Sbjct 311250 GAAACGCTCGACCAAATTCTCTAGCACTATTCCATCACTTGCAGCAAAGAAGGCTAACAC 311309 Query 18592 ATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGA 18651 |||| ||||| || ||| |||||||| | ||||| ||| | ||| || || Sbjct 311310 ATATGAGATGAAGTGACGTTCGCCGACCTTGAGACTATTCCAGTCACTAAAATCCTTGGA 311369 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 ||||| || || || |||||||| |||| Sbjct 311370 GAGATCGACCTCCTCAACGGTCCAAAACGATG 311401 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18172 GTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACC 18231 ||||| ||| ||||| || || | ||| || || || |||||||| ||||| | ||| Sbjct 310854 GTGTAGACCCTCATCCCTACTGATCAGTTCATTGCTGAATGTTAACCCAGGCATCAAACC 310913 Query 18232 TCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC 18288 | |||||| ||||||||||| | ||||| || | ||| ||||| |||||||| || Sbjct 310914 GCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATACCCTCGAC 310970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731832222756800