Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1332 131 3e-25 seq1867 111 3e-19 seq1456 87.8 3e-12 >seq1332 Length=523337 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || | || | |||| |||||| || || || ||| Sbjct 494214 ATGCCACCGCGAAGTCGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATGTTGTAGTCT 494273 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| |||||||| || || |||||||| | | |||||||| ||| Sbjct 494274 GAGAGAGTGCGTCCGTCTTCCAATTGCTTCCCTGCAAAAATCAGACGTTGTTGGTCGGGT 494333 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 494334 GGAATCCCTTCCTTATCCTGAATTTTCGCCTTGACATTTTCGATGGTATCACTTGATTCG 494393 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| || || |||||||| | |||||||||||| Sbjct 494394 ACTTCCAAAGTTATGGTTTTCCCTGTCAATGTTTTGACGAATATCTGCAT 494443 >seq1867 Length=410790 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | ||||| || || ||||| Sbjct 315234 ATGCCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCG 315293 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | |||||| || |||||||| || | ||| ||||||||| Sbjct 315294 GACAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGT 315353 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || |||||||| || ||||| | ||| Sbjct 315354 GGGATGCCTTCCTTGTCTTGAATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCA 315413 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || ||||| | ||| || | |||||| |||||| Sbjct 315414 ACTTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||| | ||||| || || ||||| || Sbjct 315008 ACCACCGCGTAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGA 315067 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| |||| || | |||||| || |||||||| || | ||| ||||||||||| Sbjct 315068 CAGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGG 315127 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| || || || ||||| || ||||| | ||| || Sbjct 315128 GATGCCTTCTTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAAC 315187 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || || || ||||| || | || || | ||||||||||| Sbjct 315188 TTCAAGGGTGATCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || || || ||||||| |||||| || || ||||| || Sbjct 291201 ACCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGA 291260 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || |||| || | |||||| ||||| ||||| | | || ||||||||||| Sbjct 291261 CAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGG 291320 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| |||||||| || || ||| || || || || || | || || Sbjct 291321 GATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGAC 291380 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || ||||| | || || | || |||||||| Sbjct 291381 CTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | |||| || | |||| ||||| || || || || Sbjct 292111 ATACCACCGCGAAGGCGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 292170 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| ||||||||||| ||||| ||||| | | || ||||||||| Sbjct 292171 GACAATGTACGACCGTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGT 292230 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||| || || || || || | || Sbjct 292231 GGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCG 292290 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| | || || | || |||||||| Sbjct 292291 ACCTCAAGAGTGATAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 >seq1456 Length=366961 Score = 87.8 bits (96), Expect = 3e-12 Identities = 196/292 (67%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 38983 ACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtt 39042 |||| || | || |||||||| | || | | ||| || ||||| || ||| | || Sbjct 310700 ACATCAACTTGCAGTTCATACCAATCAAACTCACTGGCAAAGCATCCGAAAGAAACTTTT 310759 Query 39043 tttctatttctacagcttgtttaattatcataattatattattttttgataatttatatt 39102 |||||||||||| || | ||||| || || | | || |||| || | Sbjct 310760 GTTCTATTTCTACCGCCTCCTTAATGATGGCAAGCACACGATCCTTTGCAGGCTTTTGAA 310819 Query 39103 taatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATA 39162 ||| | ||| | || || || || || || || |||| ||| || |||||| | Sbjct 310820 CAATGT-ATTTG--TACAGCAAGCAGGCGAAGTCGCAGTGTAGACCCTCATCCCTACTGA 310876 Query 39163 TAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTG 39222 | | |||||| || || ||||| || ||||| || || | ||||| ||||||||||||| Sbjct 310877 TCAGTTCATTGCTGAATGTTAACCCAGGCATCAAACCGCGTTTTTTCAGCCAAAATATTG 310936 Query 39223 ATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTAT 39274 || || || | ||| ||||| |||||||| || ||||| || | ||| Sbjct 310937 CGGCGAAGCTGCCAGAGAAGAAAATACCCTCGACTGCAGCAAAGGCAACTAT 310988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905086805858400