Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1971 91.5 4e-13 >seq1971 Length=252229 Score = 91.5 bits (100), Expect = 4e-13 Identities = 213/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | ||| ||||| || ||||| || | |||||| ||||| ||||| || ||| Sbjct 41819 TTGATCAGACGCCGCTGGATGTAACCCGTCTCGGCTGTTTTAACAGCAGTATCGATCAGA 41878 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCA-ATA 302700 || ||||||||||||| || |||||||| | || || ||| |||| | | ||| Sbjct 41879 CCCTCACGACCACCCATGGCGTGGAAGAAGAATTC-AGTGGGCGTCAAGCCAGCGAGATA 41937 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 | ||| |||| ||||| ||||| | ||||| || ||| || | || || ||| Sbjct 41938 A--GAGTTCTCCACGAACCCACGGGATTCGGGACCATAATCGTCCTGAATGAAATGCGGC 41995 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 || || |||| | || | || ||||| ||||| || ||||| || || || | Sbjct 41996 AGTGTTCTGTGACGGAATCCAAAAGGTATACGTTTTCCTTCTACGTTTTGTTGACCGACA 42055 Query 302821 CACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 || | ||| | ||| || || || | ||| || ||||| || ||||||||| Sbjct 42056 CAAGCAATAACCTGAGAGATGTTGATGCGGGAGCCTTTAGAGCCGGCCACCACCATAATA 42115 Query 302881 ACAAACCTGTTATTCTT 302897 || |||||| ||| Sbjct 42116 TTGAAGTTGTTATACTT 42132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471735606881276