Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1097 291 2e-74 seq3218 251 2e-62 >seq1097 Length=3195 Score = 291 bits (322), Expect = 2e-74 Identities = 258/316 (82%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 25841 TTATGTGCTTTCTCTTCGAGCCACCTGACACACGCTTCCTCAAACGTCATATCAGGTATT 25900 |||| ||||| || || ||||| || | || || || ||||| || | |||||||| Sbjct 3 TTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAA 62 Query 25901 TCACCAAG-TTTGCTGACCCGCCATGCTTCAGCCTTTAGCTTGTCATGGAGCTCTGTCGC 25959 || || || ||| || || ||||| ||| || ||| ||||||| || | ||| || Sbjct 63 TCCCCTAGCTTTTCT-ACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGC 121 Query 25960 CTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCTTTTACCGTTCGGCAATGTGAA 26019 |||| |||||||||||| |||||||| | |||| || ||| ||| ||| | | ||| Sbjct 122 TTGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCGAA 179 Query 26020 -AC-TGGCGTACCATATTTCACTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGC 26077 || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 TACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGC 239 Query 26078 CATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGAGCCGCAATGCAGGCTT 26137 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 240 CATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTT 299 Query 26138 GTCGTGTTGTGAGGTA 26153 | |||||||||||||| Sbjct 300 GCCGTGTTGTGAGGTA 315 >seq3218 Length=1940 Score = 251 bits (278), Expect = 2e-62 Identities = 139/139 (100%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 39759 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 39818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1940 CCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCG 1881 Query 39819 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 39878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1880 TGGCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGT 1821 Query 39879 TTTTCAGGACGGTTTTTCC 39897 ||||||||||||||||||| Sbjct 1820 TTTTCAGGACGGTTTTTCC 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132591553613112