Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1996 120 4e-21 seq1530 111 2e-18 seq646 111 2e-18 seq1313 105 8e-17 seq1960 91.5 2e-12 >seq1996 Length=225451 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || | | || || || || || |||||||| || | || || Sbjct 11253 GCTTGGCCAATTCACCAGGAAGGAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGA 11312 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || || |||| || ||||| | | || || || | | Sbjct 11313 TGGTCGACCGCTTGTTATAGTGAGCGAGGCGGCTGGACTCGGCGGCAATACGCTCAAAGA 11372 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| || ||||||| |||||| | |||| ||||| || |||||||| Sbjct 11373 TGTCGTTGACAAAGGAATTCATGATCGACATAGCCTTGGATGAGATACCGGTGTCGGGGT 11432 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||| |||||||||||| Sbjct 11433 GCACCTGACGGAGGACCTTGTAGATG 11458 >seq1530 Length=283006 Score = 111 bits (122), Expect = 2e-18 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 1592111 CGCACCGACGACATCTCGCCGTGGGAC-AAGGAGTTTTGCGACGTCGAGCAGCCCACCCT 1592169 || || || |||||| | |||||| ||| | |||||||| ||||| || || || Sbjct 191840 CGAACTGATGACATCCCAAGTTGGGACCAAGAATTTTTGCGA-GTCGATCAAGGAACTCT 191782 Query 1592170 CTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA-GCCTCTGCTCGATCTTGGGT 1592228 |||||| | || |||||||| |||||| | |||||||| | || | || ||| || | | Sbjct 191781 GTTTGAGCTCATGCTCGCCGCAAACTACTTGGACATCAAAGGCT-TACTGGATGTTTGTT 191723 Query 1592229 GCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTA 1592288 |||| | ||||| ||||||||||| || || | || || || |||||||| ||||||| Sbjct 191722 GCAAAACCGTGGCTAACATGATCAAAGGAAAAACTCCGGAAGAAATCCGCAAAACCTTTA 191663 Query 1592289 ACATCAA 1592295 | ||||| Sbjct 191662 ATATCAA 191656 >seq646 Length=63027 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 24870 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTC 24811 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| |||| || ||||||| | ||| | | || || |||| ||||| Sbjct 24810 GAACGCTTGTTGTAGTGGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCA 24751 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| |||||||| ||| ||||| || ||| ||||| || Sbjct 24750 TTCACAAACGAGTTCATGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACT 24691 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || ||||||||||||||| Sbjct 24690 TGACGCAGCACCTTGTAGATG 24670 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 25477 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTC 25418 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| |||| || ||||||| | ||| | | || || |||| ||||| Sbjct 25417 GAACGCTTGTTGTAGTGGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCA 25358 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| |||||||| ||| ||||| || ||| ||||| || Sbjct 25357 TTCACAAACGAGTTCATGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACT 25298 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || ||||||||||||||| Sbjct 25297 TGACGCAGCACCTTGTAGATG 25277 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 33422 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTC 33363 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| |||| || ||||||| | ||| | | || || |||| ||||| Sbjct 33362 GAACGCTTGTTGTAGTGGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCA 33303 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| |||||||| ||| ||||| || ||| ||||| || Sbjct 33302 TTCACAAACGAGTTCATGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACT 33243 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || ||||||||||||||| Sbjct 33242 TGACGCAGCACCTTGTAGATG 33222 >seq1313 Length=540921 Score = 105 bits (116), Expect = 8e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||| || | | || || | ||||| |||||||| || | || ||| | Sbjct 389281 TGGCCAATTCACCAGGAAGGAGAAGACAGACGGCAGTCTGGATTTCTCTGCTGGTGATGG 389340 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| |||| |||||||||| || ||||| | | ||||| || | || Sbjct 389341 TTGAGCGCTTGTTGTAGTGAGCCAGACGGCTGGACTCGGCGGCAATGCGCTCAAAGTTGC 389400 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||| || || ||||||| ||||| | ||| ||||| || ||||||||||| Sbjct 389401 GGTTGACGAAGGAATTCATGATTGACATAGCCTTCGACGAGATACCGGTGTCGGGGTGCA 389460 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||| |||||||| ||| Sbjct 389461 CCTGACGGAGGACCTTGTAAATG 389483 >seq1960 Length=267262 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || || || |||| ||| || | || ||| || || |||||| |||| || Sbjct 206087 AGACGGACAGCAGTCTAGATTTCTCTGCTGGTGATGGTCGAGCTCTTGTTGTAGTGAGCG 206146 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||||| || ||| | | | ||||| || | |||||||||||||| |||||||| | Sbjct 206147 AGACGGCTGGACTCAGCGGCAATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCATAAGT 206206 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 |||| | ||| | |||| || ||||||||||||||| ||| |||||||| || Sbjct 206207 GACA--GCCTTTGAGAAGATACCGGTGTCGGGGTGCACCTGACAGAGGACCTTGTAAAT 206263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106782382758316