Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1332 138 1e-27 seq1867 131 2e-25 seq1873 127 2e-24 >seq1332 Length=523337 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||||||||||||||| || ||||| || || || || || || | Sbjct 494215 ATGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGT 494156 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||| | ||||| ||||| || || || || ||||| ||||| Sbjct 494155 GATACGATCGAGAACGTTAAAGC-TAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCA 494097 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||| ||||| || || ||| |||| || | | | || ||||| || Sbjct 494096 GCAGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAA 494037 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||||| || || || |||||| | || ||||| || || Sbjct 494036 CATTCAAAAGGAATCCACTCTTCATTTGGTGCTCCGTTTGCGTGGCGG 493989 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 |||||||||| || | || ||| | || || || || || || ||||| || || || | Sbjct 494673 CGATGCAGATTTTCGTGAAGACGTTGACAGGAAAGACCATAACTCTCGAGGTTGAGGCGA 494614 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || | || || ||||| ||||| || ||||| || || || |||| Sbjct 494613 GTGATACCATCGAGAATGTGAAGGCTAAGATTCAAGATAAGGAAGGCATTCCACCTGATC 494554 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || ||||| || || || |||||||| || ||| | | | || || || | Sbjct 494553 AGCAGCGCTTGATTTTCGCGGGCAAACAGCTAGAAGATGGACGCACTCTTTCTGACTACA 494494 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||||||||||||| || ||| | || | || |||||||| || Sbjct 494493 ACATCCAAAAGGAATCGACTCTTCACCTCGTTCTCCGCTTGCGCGGTGG 494445 >seq1867 Length=410790 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || |||||||| || || || || ||||| ||||| | | Sbjct 315235 ATGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGC 315176 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||||||||| || || || || || Sbjct 315175 GATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAG 315116 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| |||||||| ||||| || || || ||| |||| ||||| ||| Sbjct 315115 CAGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAAC 315056 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || || ||||| | || | ||||| || Sbjct 315055 ATCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGG 315009 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | || ||||| || || || ||||| || || || || || || Sbjct 292343 ACGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACTATCACTCTTGAGGTCGAGGCT 292284 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| | || | || ||| ||||| ||||| || ||||| || || || || Sbjct 292283 AGCGACACAATTGAGAACGTGAAAGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGAC 292224 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGAT 24877 || ||||| | || || || || ||||| |||| || ||| ||| |||| || Sbjct 292223 CAGCAACGCCTTATTTTCGCTGGCAAACAATTGGAAGACGGTCG---TACATTGTCTGAC 292167 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || || ||||| || || ||| | ||| | || | ||||| || Sbjct 292166 TACAACATCCAGAAAGAATCTACCCTTCACCTAGTGCTTCGCCTTCGCGGTGG 292114 >seq1873 Length=396352 Score = 127 bits (140), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || ||||||||||| || || ||||| | Sbjct 292488 GATGCAGATCTTCGTCAAGACACTCACGGGAAAGACTATTACGCTTGAGGTTGAAGCATC 292547 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 292548 GGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGATCA 292607 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| ||||| || || || || || |||||||| | | | || ||||| || Sbjct 292608 ACAACGATTGATTTTCGCGGGAAAGCAACTGGAGGACGGCCGTACTCTTTCTGATTACAA 292667 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 |||||| || ||||| || | || |||| ||||| | | || ||| || ||| || Sbjct 292668 CATTCAGAAAGAATCCACCTTGCATCTGGTTCTGCGACTCAGGGGTGGCATAATTGAACC 292727 Query 24943 AAC 24945 || Sbjct 292728 TAC 292730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449873148065440