Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1996 159 5e-33 seq1313 132 8e-25 seq1960 123 4e-22 seq646 123 4e-22 >seq1996 Length=225451 Score = 159 bits (176), Expect = 5e-33 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| || || ||||| || ||||||||| |||||| ||| || | | Sbjct 11214 TGTACTTGGTCACGGCTTTCGTGCCCTCGGAAACGGCGTGCTTGGCCAATTCACCAGGAA 11273 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | | || ||| || ||||||||| | Sbjct 11274 GGAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGATGGTCGACCGCTTGTTATAGT 11333 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| || ||||| | | || || || | |||||||||||||| || |||| Sbjct 11334 GAGCGAGGCGGCTGGACTCGGCGGCAATACGCTCAAAGATGTCGTTGACAAAGGAATTCA 11393 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| | ||| ||||| || ||||||||||||||| ||| ||||||| Sbjct 11394 TGATCGACATAGCCTTGGATGAGATACCGGTGTCGGGGTGCACCTGACGGAGGACCTTGT 11453 Query 1485710 A 1485710 | Sbjct 11454 A 11454 >seq1313 Length=540921 Score = 132 bits (146), Expect = 8e-25 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| || || |||| || ||||||| | |||||| ||| || | | Sbjct 389239 TGTACTTGGTCACGGCTTTCGTGTCCTCGGAAACGGCGTCCTTGGCCAATTCACCAGGAA 389298 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||| |||||||| || | | || ||| || ||||||||| | Sbjct 389299 GGAGAAGACAGACGGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGCTTGTTGTAGT 389358 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| |||| || ||||| | | ||||| || | || |||||| || || |||| Sbjct 389359 GAGCCAGACGGCTGGACTCGGCGGCAATGCGCTCAAAGTTGCGGTTGACGAAGGAATTCA 389418 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | || ||||| || ||||||||||||||| ||| ||||||| Sbjct 389419 TGATTGACATAGCCTTCGACGAGATACCGGTGTCGGGGTGCACCTGACGGAGGACCTTGT 389478 Query 1485710 AAA 1485712 ||| Sbjct 389479 AAA 389481 >seq1960 Length=267262 Score = 123 bits (136), Expect = 4e-22 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| ||||| || || ||||| || ||||||||| |||||| || || | Sbjct 206022 TGTAATTGGTCACGGCTTTCGTGCCCTCGGATACGGCGTGCTTGGCCAATTTACCAACAA 206081 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || || || || |||| ||| || | | || ||| || || |||||| ||| Sbjct 206082 GGAGAAGACGGACAGCAGTCTAGATTTCTCTGCTGGTGATGGTCGAGCTCTTGTTGTAGT 206141 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || |||| || ||| | | | ||||| || | |||||||||||||| ||||| Sbjct 206142 GAGCG--AGACGGCTGGACTCAGCGGCAATGCGCTCAAAGATGTCGTTGACAAAGGAGTT 206199 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| | |||| | |||| | |||| || ||||||||||||||| ||| ||||| Sbjct 206200 CATAAGTGACAGC-CTTTG-AGAAGATACCGGTGTCGGGGTGCACCTGACAGAGGACCTT 206257 Query 1485708 GTAAA 1485712 ||||| Sbjct 206258 GTAAA 206262 >seq646 Length=63027 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 24914 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTAGCAAGCTCACCGGGCA 24855 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 24854 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTCGAACGCTTGTTGTAGT 24795 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||| | | || || |||| ||||| || ||||||||||||| Sbjct 24794 GGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCATTCACAAACGAGTTCA 24735 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||| || ||| ||||| || || |||||||||| Sbjct 24734 TGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACTTGACGCAGCACCTTGT 24675 Query 1485710 A 1485710 | Sbjct 24674 A 24674 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 25521 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTAGCAAGCTCACCGGGCA 25462 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 25461 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTCGAACGCTTGTTGTAGT 25402 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||| | | || || |||| ||||| || ||||||||||||| Sbjct 25401 GGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCATTCACAAACGAGTTCA 25342 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||| || ||| ||||| || || |||||||||| Sbjct 25341 TGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACTTGACGCAGCACCTTGT 25282 Query 1485710 A 1485710 | Sbjct 25281 A 25281 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 33466 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTAGCAAGCTCACCGGGCA 33407 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 33406 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTCGAACGCTTGTTGTAGT 33347 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||| | | || || |||| ||||| || ||||||||||||| Sbjct 33346 GGGCAAGACGGCTAGACTCAGCAGCAATACGCTCGAAAATGTCATTCACAAACGAGTTCA 33287 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||| || ||| ||||| || || |||||||||| Sbjct 33286 TGATCGACATCGCCTTCGACGAGATACCAGTGTCCGGGTGGACTTGACGCAGCACCTTGT 33227 Query 1485710 A 1485710 | Sbjct 33226 A 33226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915783883408772