Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1873 125 5e-24 seq1867 98.7 6e-16 >seq1873 Length=396352 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||| || | |||| || ||||||||||| || || || Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || |||||||||||||| ||||| |||| |||||| || ||| | || Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| |||||||| | || || |||||| | | || | || || || || Sbjct 292595 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAACC 292536 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||||||||| ||||| || ||||||||||| Sbjct 292535 TCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 292489 >seq1867 Length=410790 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || ||||| ||||| ||||| || | | || | || Sbjct 291445 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 291504 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || ||||| || || ||||||||||| | || | || ||||| || Sbjct 291505 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291564 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | ||| |||||||||| || | ||| || ||| Sbjct 291565 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291624 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| ||||| |||||||| Sbjct 291625 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || ||||| ||||| ||||| || | | || | || Sbjct 291673 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 291732 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || ||||| || || ||||||||||| | || | || ||||| || Sbjct 291733 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 291792 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | ||| |||||||||| || | ||| || ||| Sbjct 291793 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 291852 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| ||||| |||||||| Sbjct 291853 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || ||||| ||||| ||||| || | | || | || Sbjct 291901 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCC 291960 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || ||||| || || ||||||||||| | || | || ||||| || Sbjct 291961 TCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 292020 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | ||| |||||||||| || | ||| || ||| Sbjct 292021 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTC 292080 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| ||||| |||||||| Sbjct 292081 TTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| || ||||| ||||| ||||| || | | || | || Sbjct 292129 AGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCT 292188 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || ||||| || || ||||||||||| | || | || ||||| || Sbjct 292189 TCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 292248 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | || | |||||||| |||| || || ||| Sbjct 292249 TGAATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGATAGTC 292308 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 292309 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| || || || | | || | || || ||||| || || ||||| Sbjct 291237 CTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCGTCCTCTAGTTGTTTGCCAGCGAA 291296 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || ||||||||||| | || | || ||||| || | || || ||| ||| Sbjct 291297 AATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCTTTCACGTT 291356 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| |||||||||| || | ||| || ||||| || || || ||||| || Sbjct 291357 CTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGCGTCTTCAC 291416 Query 34966 AAAGATCTGCAT 34977 ||| |||||||| Sbjct 291417 AAAAATCTGCAT 291428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325675541131412