Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq3218 324 3e-84 seq1097 286 9e-73 seq1136 86.0 2e-12 >seq3218 Length=1940 Score = 324 bits (358), Expect = 3e-84 Identities = 218/244 (89%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 19494 TTCAATATGTCCCGTTCGTCGGTAACCCGCTTCAGCTCTTTCTGGAGGCGTCGGATCTCA 19553 || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 244 TTTAATATGTCCCGTTCGTCGGTAACCCGTTTCAGCTCTTTCTGGAGACGGCGGATCTCG 185 Query 19554 GCCTGAGCGTCTGACTGGACTTTATTGGTTGAGGAATCCGGGCCATATGCCTTTATCCAG 19613 |||||||| |||||||| ||||||| || || |||||||| || || |||||||||| Sbjct 184 GCCTGAGCATCTGACTGTTCTTTATTAGTGGAAGAATCCGGACCGTACTTCTTTATCCAG 125 Query 19614 GCATAAAGACTGTGGGTGGTGATACCGAGACGTGTTGCCACGCTGGAAACAGAATGGCCG 19673 |||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| ||| Sbjct 124 GCATAAAGGCTGTGGGTGGTGATATCGAGACGTGTTGCAACGCTGGCAACAGAATAACCG 65 Query 19674 CGATCAACAACCTGTTTTACCGCTTCAATTTTAAACTCTTCGGGATAACGCTTACCGCTC 19733 |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| Sbjct 64 AGATCAACAACCTGTTTGACTGCTTCAGTTTTAAACTCTTCGGGATAACGCTTACCGCTC 5 Query 19734 ATGG 19737 |||| Sbjct 4 ATGG 1 >seq1097 Length=3195 Score = 286 bits (316), Expect = 9e-73 Identities = 258/318 (81%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 24202 TTTTATGTGCTTTCTCTTCAAGCCACCTGACACACGCTTCCTCGAACGTTATATCAGGTA 24261 |||||| ||||| || |||||||| || | || || || || || || | |||||||| Sbjct 1 TTTTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTA 60 Query 24262 TTTCACCAAG-TTTGCTGACCCGCCATGCTTCAGCCTTTAGCTTGTCATGGAGTTCTGTC 24320 || || || ||| || || ||||| ||| || ||| ||||||| || | || Sbjct 61 AATCCCCTAGCTTTTCT-ACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGA 119 Query 24321 GCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTTAAATCTTTTACCGTTCGGCAATGTG 24380 || |||| |||||||||||| |||||||| | |||| || ||| ||| ||| | | | Sbjct 120 GCTTGCCGTTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGA--GCG 177 Query 24381 AA-AC-TGGCGTACCATATTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 24438 || || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 AATACGAGGCATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTAT 237 Query 24439 GCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGAGCCGCAATGCAGGC 24498 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 238 GCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGC 297 Query 24499 TTGTCGTGTTGTGAGGTA 24516 ||| |||||||||||||| Sbjct 298 TTGCCGTGTTGTGAGGTA 315 Score = 107 bits (118), Expect = 5e-19 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 18917 TTACGTCGCCACACGGCCATCAGAAGTGCATT-CAGGACAATATCCTTTGTCATCCGGGG 18975 ||||| ||||||| |||||| | || |||| |||| || | | | ||||| || || Sbjct 1933 TTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGT-TGCGCCGTCATGCGTGG 1875 Query 18976 CTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAG 19035 | |||||||||||||||||| || || ||||||||| ||||| ||||||||||| Sbjct 1874 CGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAG 1815 Query 19036 CCAGCCTTCGTGAGTCCGGATGTAGGTGATGTC 19068 ||||||||| | || || | ||| |||||||| Sbjct 1814 CCAGCCTTCATCTGTACGTAAGTACGTGATGTC 1782 >seq1136 Length=1633 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 8/138 (6%) Strand=Plus/Plus Query 17924 ATAGCGCCGCTTCAGGATGCGGTTGATTTAGGTATGGCAACAGATGATGAAACGAAACT- 17982 || ||||||||||||||||| | ||| | | || ||||| || || |||| || Sbjct 699 ATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAAT----CTC 754 Query 17983 GTTACTGG---CATGGAAAAAATATCGCGTGCTATTGATGCGTGTTAATACTTCAACAGC 18039 ||| |||| |||||||||| ||||| || | ||| |||||| |||| ||||| || Sbjct 755 GTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGC 814 Query 18040 ACTCGATATTGAATGGCC 18057 || |||||||||||||| Sbjct 815 ACAGGATATTGAATGGCC 832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127097437302720