Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1332 113 7e-20 seq1867 100 4e-16 >seq1332 Length=523337 Score = 113 bits (124), Expect = 7e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | |||||||| ||||| ||||| || ||| | || || ||| | | Sbjct 494442 TGCAGATATTCGTCAAAACATTGACAGGGAAAACCATAACTTTGGAAGTCGAATCAAGTG 494383 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| || ||| ||||| ||||||||||| |||| Sbjct 494382 ATACCATCGAAAATGTCAAGGCGAAAATTCAGGATAAGGAAGGGATTCCACCCGACCAAC 494323 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||||||||| || ||||| || || | || | |||| || || | Sbjct 494322 AACGTCTGATTTTTGCAGGGAAGCAATTGGAAGACGGACGCACTCTCTCAGACTACAACA 494263 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | |||||||| || || |||| Sbjct 494262 TCCAAAAAGAGTCTACGCTCCA 494241 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| |||| ||||| || || ||| | || || || || | Sbjct 494214 TGCAAATTTTTGTTAAAACGCTAACCGGAAAGACTATCACTCTGGAGGTCGAGGCTAGTG 494155 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||| || ||| ||| || |||||||| || ||||| | Sbjct 494154 ATACGATCGAGAACGTTAAAGCTAAGATTCAAGATAAGGAGGGCATTCCTCCAGATCAGC 494095 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||||||||| || || || || || | | || | | ||||| || | Sbjct 494094 AGCGTTTGATTTTTGCAGGCAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAACA 494035 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| ||| | ||||| || Sbjct 494034 TTCAAAAGGAATCCACTCTTCATTTGGT 494007 >seq1867 Length=410790 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || ||| | || || || || || || |||| || ||| | || Sbjct 315462 TGCAAATATTCGTGAAGACACTTACTGGGAAGACCATCACCCTTGAAGTTGAAGCAAGCG 315403 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| || || ||| || |||||||| ||||| || || | Sbjct 315402 ATACCATTGAGAATGTAAAGGCGAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAGC 315343 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || |||||| | || || | |||| | | ||||| || | Sbjct 315342 AGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAACA 315283 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| ||||| Sbjct 315282 TCCAAAAAGAATCCACTCTCCAT 315260 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | || || || || || || |||| || ||| | || Sbjct 315234 TGCAGATATTTGTGAAGACCCTGACCGGTAAGACGATCACCCTTGAAGTTGAAGCAAGCG 315175 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| ||||||||||| ||||| || || | Sbjct 315174 ATACCATTGAGAATGTGAAGGCGAAGATTCAAGACAAAGAAGGCATCCCACCTGACCAGC 315115 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || |||||| | || || | |||| | | ||||| || | Sbjct 315114 AGCGTTTGATTTTTGCCGGCAAACAACTTGAAGACGGTCGAACTCTGTCCGATTACAACA 315055 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAAT 146262 | ||||||||||| ||| ||||| | || | || || | || ||| ||| Sbjct 315054 TCCAAAAAGAATCCACTCTCCATCTGGTGCTTCGTCTACGCGGTGGTTAAT 315004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786123671856160