Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1332 138 9e-28 seq1867 123 2e-23 seq1873 122 7e-23 >seq1332 Length=523337 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| |||||||||||||| |||||||| ||||||||||| ||||| | Sbjct 493989 CCGCCACGCAAACGGAGCACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 494048 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || | || ||||| ||| | ||||| | |||||||| || ||| Sbjct 494049 AGAGTGCGACCGTCTTCCAACTGCTTGCCTGCAAAAATCAAACGCTGCTGATCTGGAGGA 494108 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || ||||| ||| || | ||| || | || | || ||| | || || Sbjct 494109 ATGCCCTCCTTATCTTG-AATCTTAGCTTTAACGTTCTCGATCGTATCACTAGCCTCGAC 494167 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || || |||| ||||||||||| || ||||| Sbjct 494168 CTCCAGAGTGATAGTCTTTCCGGTTAGCGTTTTAACAAAAATTTGCAT 494215 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || ||||| || |||||||| ||||| || || | | ||||| || || | ||| Sbjct 494241 TGGAGCGTAGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTGCGTCCGTCTTCCAATTGC 494300 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | |||| | ||| || || || ||||| || || || || || |||||| Sbjct 494301 TTCCCTGCAAAAATCAGACGTTGTTGGTCGGGTGGAATCCCTTCCTTATCCTG-AATTTT 494359 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | |||||| |||| | || ||| ||| ||||| | |||||| ||||| || || Sbjct 494360 CGCCTTGACATTTTCGATGGTATCACTTGATTCGACTTCCAAAGTTATGGTTTTCCCTGT 494419 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| Sbjct 494420 CAATGTTTTGACGAATATCTGCAT 494443 >seq1867 Length=410790 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| ||| || |||||||||||||| ||||| ||||| | | || ||| Sbjct 315020 ACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGACAGAGTTCGACC 315079 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||||||||| ||| | ||||| | ||||| || || || || || ||||| Sbjct 315080 GTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTT 315139 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || ||| | || | || || ||| |||||||| || | Sbjct 315140 GTCTTG-AATCTTCGCCTTCACATTCTCAATGGTATCGCTTGCTTCAACTTCAAGGGTGA 315198 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || |||||||||||||| Sbjct 315199 TCGTCTTACCGGTCAGGGTCTTCACAAATATCTGCAT 315235 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct 315237 CCACCACGCAGACGAAGCACCAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCGGAC 315296 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| || || ||||||||||| ||| | ||||| | ||||| || || || Sbjct 315297 AGAGTTCGACCGTCTTCAAGTTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCAGGTGGG 315356 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| ||| || | || ||| | || | || || ||| || Sbjct 315357 ATGCCTTCCTTGTCTTG-AATCTTCGCCTTTACATTCTCAATGGTATCGCTTGCTTCAAC 315415 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || ||||| | || || || ||||| |||||| Sbjct 315416 TTCAAGGGTGATGGTCTTCCCAGTAAGTGTCTTCACGAATATTTGCATT 315464 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || ||||| | ||||| || |||||||| || ||||| || || | ||||| | ||| Sbjct 292126 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATG-TACGACC 292184 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||||||||| | || | | |||||| || || || || || || || Sbjct 292185 GTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTT 292244 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| || | || | ||||| | || || |||||||| | Sbjct 292245 ATCTTG-AATCTTCGCTTTCACGTTCTCAATTGTGTCGCTAGCCTCGACCTCAAGAGTGA 292303 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| | || || ||||| |||||||| Sbjct 292304 TAGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 292340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || ||||| | ||||| || |||||||| || ||||| || || | ||||| | ||| Sbjct 291898 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATG-TACGACC 291956 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||||||||| | || | | |||||| || || || || || || || Sbjct 291957 GTCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTT 292016 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| || | || | |||||| || || || || || | Sbjct 292017 ATCTTG-AATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGA 292075 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| | || || ||||| |||||||| Sbjct 292076 TAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 292112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || ||||| | ||||| || |||||||| || ||||| || || | ||||| | ||| Sbjct 291442 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATG-TACGACC 291500 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||||||||| | || | | |||||| || || || || || || || Sbjct 291501 GTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTT 291560 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| || | || | |||||| || || || || || | Sbjct 291561 ATCTTG-AATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGA 291619 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| | || || ||||| |||||||| Sbjct 291620 TAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || ||||| | ||||| || |||||||| || ||||| || || | ||||| | ||| Sbjct 291670 CGAAGCACTAGGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAATG-TACGACC 291728 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | |||||||||||| | || | | |||||| || || || || || || || Sbjct 291729 GTCTTCCAATTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTT 291788 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| || | || | |||||| || || || || || | Sbjct 291789 ATCTTG-AATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGA 291847 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||| | || || ||||| |||||||| Sbjct 291848 TAGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||| || | || || ||||| || ||||| ||||| | | || ||| Sbjct 291214 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAATCAGACAAAGTACGACCG 291273 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||||||||| | || | | |||||| || || || || || || || Sbjct 291274 TCCTCTAGTTGTTTGCCAGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 291333 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||| || | || | |||||| || || || || || || Sbjct 291334 TCTTG-AATCTTCGCTTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCGAGGGTGAT 291392 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | || || ||||| |||||||| Sbjct 291393 AGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 291428 >seq1873 Length=396352 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| |||| ||| | ||||||||||| |||||||| ||||| | | Sbjct 292715 CCACCCCTGAGTCGCAGAACCAGATGCAAGGTGGATTCTTTCTGAATGTTGTAATCAGAA 292656 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||| || || || | ||||||| ||| ||||| || || Sbjct 292655 AGAGTACGGCCGTCCTCCAGTTGCTTTCCCGCGAAAATCAATCGTTGTTGATCTGGAGGG 292596 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| ||| || | ||||||| |||| | || || || ||| || Sbjct 292595 ATCCCTTCCTTGTCTTG-AATCTTGGCTTTGACATTTTCGATGGTATCCGATGCTTCAAC 292537 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || ||||| || || || | || || || || |||||||| || Sbjct 292536 CTCAAGCGTAATAGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 292486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385198786753068